Escherichia coli HYM1 |
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Putative Escherichia coli HYM1 RM systems
Ref: Zhao,Q.-Y. unpublished
REBASE ref # 37423
| Sequence length: | GenBank #: | |
| Chromosome: | 5,018,039 bp | CP141765 |
| plasmid p1-HYM1: | 96,110 bp | CP141766 |
REBASE acronym: EcoHYM1
Org_num: 73848
All begin U8327_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6535 | AAA family ATPase | |||
| 6540 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoHYM1ORF6545P |
| 6545 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoHYM1ORF6545P |
| 6550 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | EcoHYM1ORF6545P |
| 6555 | transposase | |||
| 13915 | 237 aa hypothetical protein | |||
| 13920 | R | EcoTHYM1ORF20980P (100% identity) | EcoHYM1ORF13930P | |
| 13925 | S | S.EcoTHYM1ORF20980P (100% identity) | S.EcoHYM1ORF13930P | |
| 13930 | M | M.Ecos135ORF4680P (100% identity) | M.EcoHYM1ORF13930P | |
| 13935 | DUF262 domain-containing protein | |||
| plasmid p1-HYM1 | ||||
| 24450 | type II toxin-antitoxin system Phd/YefM family | |||
| 24455 | M | M.SspS13ORF175P (99% identity) | M.EcoHYM1ORF24455P | |
| 24460 | S | S.SspS13ORF175P (100% identity) | S.EcoHYM1ORF24455P | |
| 24465 | R | KpnLL83ORF1P (100% identity) | EcoHYM1ORF24455P | |
| 24470 | 3-phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 880 | drug/metabolite exporter YedA | |||
| 885 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.EcoHYM1DcmP |
| 890 | M | M.Ecos135DcmP (100% identity) | CCWGG | M.EcoHYM1DcmP |
| 895 | phosphohydrolase | |||
| 3275 | LexA family transcriptional regulator | |||
| 3280 | M | M.Ecos135ORF19235P (100% identity) | GATC | M.EcoHYM1ORF3280P |
| 3285 | PerC family transcriptional regulator | |||
| 8360 | DNA-binding transcriptional regulator Fis | |||
| 8365 | M | M.Fnu048ORFDP (100% identity) | ATGCAT | M.EcoHYM1ORF8365P |
| 8370 | DUF2556 family protein | |||
| 8915 | ribulose-phosphate 3-epimerase | |||
| 8920 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoHYM1DamP |
| 8925 | cell division protein DamX | |||
| 13650 | peptidase | |||
| 13655 | R | EcoTHYM1ORF21255P (100% identity) | EcoHYM1ORF13655P | |
| 13660 | HNH endonuclease | |||
| 13700 | DEAD/DEAH box helicase | |||
| 13705 | RM | EcoTHYM1ORF21205P (100% identity) | EcoHYM1ORF13705P | |
| plasmid p1-HYM1 | ||||
| 24560 | tellurite/colicin resistance protein | |||
| 24575 | M | M.KpnLL83ORF28P (100% identity) | M.EcoHYM1ORF24575P | |
| 24580 | recombination-associated protein RdgC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13930 | class I SAM-dependent DNA methyltransferase | |||
| ??? | R | EcoTHYM1GmrSDP (100% identity) | EcoHYM1GmrSDP | |
| 13945 | cell filamentation protein Fic | |||