Escherichia coli KE54 |
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Putative Escherichia coli KE54 RM systems
Ref: Hogins,J. et al. unpublished
REBASE ref # 37990
| Sequence length: | GenBank #: | |
| Chromosome: | 5,293,947 bp | CP141079 |
| plasmid unnamed1: | 161,809 bp | CP141078 |
REBASE acronym: EcoKE54
Org_num: 73583
All begin U8P25_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14110 | 400 aa hypothetical protein | |||
| 14115 | M | M.Sma1978ORFBP (100% identity) | ACGNNNNNGTTG | M.EcoKE54ORF14115P |
| 14120 | AAA family ATPase | |||
| 14125 | S | S.Sma1978ORFBP (100% identity) | ACGNNNNNGTTG | S.EcoKE54ORF14115P |
| 14130 | DNA binding domain-containing protein | |||
| 14135 | histidinol-phosphatase | |||
| 14140 | R | Sma1978ORFBP (100% identity) | ACGNNNNNGTTG | EcoKE54ORF14115P |
| 14145 | helix-turn-helix domain-containing protein | |||
| 20120 | endoribonuclease SymE | |||
| 20125 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoKE54ORF20135P |
| 20130 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoKE54ORF20135P |
| 20135 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoKE54ORF20135P |
| 20140 | restriction endonuclease | |||
| 21945 | ash family protein | |||
| 21950 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoKE54ORF21955P |
| 21955 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoKE54ORF21955P |
| 21960 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoKE54ORF21955P |
| 21965 | type IV toxin-antitoxin system AbiEi family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1845 | TrmB family transcriptional regulator | |||
| 1850 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoKE54ORF1850P |
| 1865 | DUF3927 family protein | |||
| 5450 | drug/metabolite exporter YedA | |||
| 5455 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoKE54DcmP |
| 5460 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoKE54DcmP |
| 5465 | phosphohydrolase | |||
| 12960 | DNA-binding transcriptional regulator Fis | |||
| 12965 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoKE54ORF12965P |
| 12970 | DUF2556 family protein | |||
| 13560 | ribulose-phosphate 3-epimerase | |||
| 13565 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoKE54DamP |
| 13570 | cell division protein DamX | |||
| 18410 | conjugal transfer protein TraG N-terminal | |||
| 18415 | M | M.EcosS3ORF15775P (100% identity) | M.EcoKE54ORF18415P | |
| 18420 | R | EcosS3ORF15775P (100% identity) | EcoKE54ORF18415P | |
| 18425 | response regulator receiver domain | |||
| 19750 | helix-turn-helix domain-containing protein | |||
| 19755 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoKE54ORF19755P |
| 19760 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoKE54ORF19755P |
| 19765 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoKE54ORF19755P |
| 19770 | McrC family protein | |||
| 25705 | 71 aa hypothetical protein | |||
| 25710 | M | M.KpnYN1ORFGP (89% identity) | M.EcoKE54ORF25710P | |
| 25715 | helix-turn-helix transcriptional regulator | |||
| plasmid unnamed1 | ||||
| 450 | 73 aa hypothetical protein | |||
| 455 | M | M.UbapRSB107ORFAP (97% identity) | M.EcoKE54ORF455P | |
| 460 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19765 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 19770 | R | EcosS9McrCP (100% identity) | EcoKE54McrCP | |
| 19775 | R | EcosS9McrBP (99% identity) | EcoKE54McrBP | |
| 19780 | IS3-like element ISEc52 family transposase | |||