Salmonella enterica subsp. enterica serovar Newport S-38A-RVX |
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Putative Salmonella enterica subsp. enterica serovar Newport S-38A-RVX RM systems
Ref: Hoffmann,M. et al. unpublished
REBASE ref # 38014
Complete sequence: 4,833,964 bp
GenBank #: CP140735
REBASE acronym: SenS38A
Org_num: 73706
All begin DLM91_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3170 | integrase arm-type DNA-binding domain-containing | |||
| 3175 | S | S.Sens29927ORF20405P (100% identity) | TTACNNNNNTGC | S.SenS38AORF3180P |
| 3180 | M | M.SenN1660III (100% identity) | TTACNNNNNTGC | M.SenS38AORF3180P |
| 3185 | R | SenN1660IIIP (100% identity) | TTACNNNNNTGC | SenS38AORF3180P |
| 3190 | WYL domain-containing protein | |||
| 3410 | DUF5655 domain-containing protein | |||
| 3415 | R | Sens29927ORF20165P (100% identity) | SenS38AORF3430P | |
| 3420 | S | S.SenN1660ORF19955P (100% identity) | CCGANNNNNGTC | S1.SenS38AORF3430P |
| 3425 | IS3-like element ISSen1 family transposase | |||
| 3430 | M | M.SenN1660ORF19955P (100% identity) | M2.SenS38AORF3430P | |
| 3435 | restriction endonuclease | |||
| 3440 | 44 aa hypothetical protein | |||
| 3445 | M | M2.SenXORF20095P (100% identity) | M1.SenS38AORF3430P | |
| 3450 | S | S.Sens29927ORF20150P (100% identity) | S2.SenS38AORF3430P | |
| 3455 | 3-5 exonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3290 | restriction endonuclease | |||
| 3295 | R | SenXORF20240P (100% identity) | SenS38AORF3295P | |
| 3300 | YebC/PmpR family DNA-binding transcriptional | |||
| 14120 | RusA family crossover junction | |||
| ??? | M | M.Sen8715ORF8990P (100% identity) | M.SenS38AORF14125P | |
| 14130 | PerC family transcriptional regulator | |||
| 17700 | replication endonuclease | |||
| 17705 | M | M.SenSL491ORF2393P (100% identity) | GATC | M.SenS38AORF17705P |
| 17710 | TraR/DksA family transcriptional regulator | |||
| 17950 | RusA family crossover junction | |||
| 17955 | M | M.SenN1660ORF5460P (100% identity) | M.SenS38AORF17955P | |
| 17960 | conserved phage C-terminal domain-containing | |||
| 18005 | 104 aa hypothetical protein | |||
| 18010 | M | M.SenN1660ORF5410P (100% identity) | M.SenS38AORF18010P | |
| 18015 | 146 aa hypothetical protein | |||
| 21155 | DNA-binding transcriptional regulator Fis | |||
| 21160 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenS38AORF21160P |
| 21165 | DUF2556 family protein | |||
| 21645 | ribulose-phosphate 3-epimerase | |||
| 21650 | M | M.StyTDamP (100% identity) | GATC | M.SenS38ADamP |
| 21655 | cell division protein DamX | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5650 | MFS transporter | |||
| 5655 | M | M.Sens29927ORF17960P (100% identity) | CAGAG | M.SenS38AORF5655P |
| 5660 | R | Sens29927ORF17960P (100% identity) | CAGAG | SenS38AORF5655P |
| 5665 | small effector SsaA | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3285 | TA system toxin CbtA family protein | |||
| 3290 | R | SenN1543MrrP (100% identity) | SenS38AMrrP | |
| 3295 | HNH endonuclease | |||
| 3430 | class I SAM-dependent DNA methyltransferase | |||
| 3435 | R | SenTTBMrrP (100% identity) | SenS38AMrr2P | |
| 3440 | 44 aa hypothetical protein | |||