Clostridioides difficile SC084-01-01 |
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Putative Clostridioides difficile SC084-01-01 RM systems
Ref: Schueler,M.A. et al. unpublished
REBASE ref # 37944
| Sequence length: | GenBank #: | |
| Chromosome: | 4,184,644 bp | CP132146 |
| plasmid p840101_2: | 130,799 bp | CP132148 |
REBASE acronym: Cdi40101
Org_num: 73382
All begin CDIF840101_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 31320 | 687 aa hypothetical protein | |||
| 31330 | R | Pdi9689IIP (100% identity) | CANNNNNNNTAAAG | Cdi40101ORF31380P |
| 31340 | 142 aa hypothetical protein | |||
| 31350 | Polymerase beta, Nucleotidyltransferase | |||
| 31360 | 102 aa hypothetical protein | |||
| 31370 | S | S.Pdi9689II (100% identity) | CANNNNNNNTAAAG | S.Cdi40101ORF31380P |
| 31380 | M | M.Pdi9689II (100% identity) | CANNNNNNNTAAAG | M.Cdi40101ORF31380P |
| 31390 | D-tagatose-1,6-bisphosphate aldolase subunit | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 28770 | Patatin-like phospholipase | |||
| 28780 | M | M.Pdi9689I (100% identity) | CAAAAA | M.Cdi40101ORF28780P |
| 28790 | 132 aa hypothetical protein | |||
| 32600 | LytTr DNA-binding domain protein | |||
| 32610 | M | M.Pdi9689DndCP (100% identity) | M.Cdi40101DndCP | |
| 32620 | AAA domain protein | |||
| 32610 | 488 aa hypothetical protein | |||
| 32620 | M | M.Pdi9689DndDP (100% identity) | M.Cdi40101DndDP | |
| 32630 | DNA sulfur modification protein DndE | |||
| 32620 | AAA domain protein | |||
| 32630 | M | M.Pdi9689DndEP (100% identity) | M.Cdi40101DndEP | |
| 32640 | 1078 aa hypothetical protein | |||
| plasmid p840101_2 | ||||
| 40290 | 35 aa hypothetical protein | |||
| 40300 | RM | Cdi13748III (100% identity) | RGAAAGR | Cdi40101ORF40300P |
| 40310 | 149 aa hypothetical protein | |||
| 40650 | 127 aa hypothetical protein | |||
| 40660 | M | M.Pph1296ORF60P (100% identity) | M1.Cdi40101ORF40660P | |
| 40670 | M | M.Pph1296ORF61P (100% identity) | M2.Cdi40101ORF40660P | |
| 40680 | PD-(D/E)XK nuclease superfamily protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21860 | DNA-binding transcriptional activator HyfR | |||
| 21870 | R | Pdi9689McrCP (100% identity) | Cdi40101McrCP | |
| 21880 | R | Pdi9689McrBP (100% identity) | Cdi40101McrBP | |
| 21890 | 240 aa hypothetical protein | |||