Salmonella enterica XB08 |
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Putative Salmonella enterica XB08 RM systems
Ref: Cao,G. unpublished
REBASE ref # 28456
Complete sequence: 4,837,757 bp
GenBank #: CP139457
REBASE acronym: SenXB08
Org_num: 73480
All begin SLW62_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 19770 | 322 aa hypothetical protein | |||
| 19775 | R | SenU1590ORF4735P (100% identity) | CACNNNNNNNRTRTC | SenXB08ORF19780P |
| 19780 | M | M.SenU1590ORF4735P (100% identity) | CACNNNNNNNRTRTC | M.SenXB08ORF19780P |
| 19785 | S | S.SenU1590ORF4735P (100% identity) | CACNNNNNNNRTRTC | S.SenXB08ORF19780P |
| 19790 | endoribonuclease SymE | |||
| 21225 | SPI-4 type I secretion system auxiliary protein | |||
| 21230 | R | SenSMEHORF14015P (100% identity) | SenXB08ORF21250P | |
| 21235 | DNA-processing protein DprA | |||
| 21240 | RecQ family ATP-dependent DNA helicase | |||
| 21245 | S | S.SenSMEHORF14015P (100% identity) | S.SenXB08ORF21250P | |
| 21250 | M | M.SenSMEHORF14015P (100% identity) | M.SenXB08ORF21250P | |
| 21255 | helix-turn-helix domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1790 | cell division protein DamX | |||
| 1795 | M | M.StyTDamP (100% identity) | GATC | M.SenXB08DamP |
| 1800 | ribulose-phosphate 3-epimerase | |||
| 2280 | DUF2556 family protein | |||
| 2285 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenXB08ORF2285P |
| 2290 | DNA-binding transcriptional regulator Fis | |||
| 5450 | zinc ribbon domain-containing protein | |||
| 5455 | M | M.SenU1590ORF5675P (100% identity) | GGTACC | M.SenXB08ORF5455P |
| 5460 | 470 aa hypothetical protein | |||
| 6195 | 59 aa hypothetical protein | |||
| 6200 | M | M.SenSMEHORF5530P (100% identity) | M.SenXB08ORF6200P | |
| 6205 | morphogenetic protein | |||
| 9495 | phosphohydrolase | |||
| 9500 | M | M.SenU1590DcmP (100% identity) | CCWGG | M.SenXB08DcmP |
| 9505 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.SenXB08DcmP |
| 9510 | drug/metabolite exporter YedA | |||
| 19915 | IS3 family transposase | |||
| 19920 | M | M.SenU1590I (100% identity) | RCCGGY | M.SenXB08ORF19920P |
| 19925 | R | SenT0044ORF19360P (100% identity) | RCCGGY | SenXB08ORF19920P |
| 19930 | response regulator receiver domain | |||
| 19935 | 307 aa hypothetical protein | |||
| 19940 | R | SenU1590ORF22235P (100% identity) | SenXB08ORF19940P | |
| 19945 | 97 aa hypothetical protein | |||
| 22325 | phage portal protein | |||
| 22330 | R | R2.SenSMEHORF12920P (100% identity) | GTCGAC | R1.SenXB08ORF22340P |
| 22335 | R | SspS13ORF1655P (100% identity) | GTCGAC | R2.SenXB08ORF22340P |
| 22340 | M | M.SspS13ORF1655P (100% identity) | GTCGAC | M.SenXB08ORF22340P |
| 22345 | replication endonuclease | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 17470 | small effector SsaA | |||
| 17475 | R | SspA292ORF17210P (100% identity) | CAGAG | SenXB08ORF17480P |
| 17480 | M | M.SenU1590ORF6985P (100% identity) | CAGAG | M.SenXB08ORF17480P |
| 17485 | MFS transporter | |||