Vibrio parahaemolyticus LC |
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Putative Vibrio parahaemolyticus LC RM systems
Ref: Xue,M. unpublished
REBASE ref # 29368
| Sequence length: | GenBank #: | |
| chromosome 1: | 3,443,361 bp | CP119301 |
| chromosome 2: | 1,828,661 bp | CP119302 |
REBASE acronym: VpaLC
Org_num: 72965
All begin PY372_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 3005 | SprT family zinc-dependent metalloprotease | |||
| 3010 | R | VpaHZ52ORF1450P (100% identity) | VpaLCORF3020P | |
| 3015 | S | S.VpaHZ52ORF1450P (100% identity) | S.VpaLCORF3020P | |
| 3020 | M | M.VpaHZ52ORF1450P (100% identity) | M.VpaLCORF3020P | |
| 3025 | 802 aa hypothetical protein | |||
| 12585 | ATP-binding protein | |||
| 12590 | R | VpaHZ52ORF11530P (100% identity) | VpaLCORF12605P | |
| 12595 | DUF4268 domain-containing protein | |||
| 12600 | S | S.VpaHZ52ORF11530P (100% identity) | S.VpaLCORF12605P | |
| 12605 | M | M.VpaHZ52ORF11530P (99% identity) | M.VpaLCORF12605P | |
| 12610 | WYL domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 925 | 211 aa hypothetical protein | |||
| 930 | M | M.Vph601ORFCP (100% identity) | CTCGAG | M.VpaLCORF930P |
| 935 | integrase arm-type DNA-binding domain-containing | |||
| 6765 | 126 aa hypothetical protein | |||
| 6770 | M | M.VpaHZ52ORF5395P (99% identity) | M.VpaLCORF6770P | |
| 6775 | YkgJ family cysteine cluster protein | |||
| 14290 | ribulose-phosphate 3-epimerase | |||
| 14295 | M | M.VphVPD14DamP (100% identity) | GATC | M.VpaLCDamP |
| 14300 | AAA family ATPase | |||
| chromosome 2 | ||||
| 18500 | AAA family ATPase | |||
| 18505 | M | M.Vph601ORFDP (100% identity) | M.VpaLCORF18505P | |
| 18510 | ParB N-terminal domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 2990 | recombinase family protein | |||
| 2995 | R | VpaHZ52McrCP (100% identity) | VpaLCMcrCP | |
| 3000 | R | Vpa18McrBP (99% identity) | VpaLCMcrBP | |
| 3005 | SprT family zinc-dependent metalloprotease | |||