Segatella copri HDE06 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Segatella copri HDE06 RM systems
Ref: Lesker,T.R. unpublished
REBASE ref # 37820
Complete sequence: 4,260,683 bp
GenBank #: CP137557
REBASE acronym: ScoHDE06
Org_num: 72893
All begin KUA49_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6450 | 46 aa hypothetical protein | |||
| 6455 | R | Bov465ORF2740P (71% identity) | ScoHDE06ORF6460P | |
| 6460 | M | M.Bvi23226ORF11065P (84% identity) | M.ScoHDE06ORF6460P | |
| 6465 | S | S1.Pxy11841ORFKP (69% identity) | S1.ScoHDE06ORF6460P | |
| 6470 | S | S1.BthB2ORF7740P (58% identity) | S2.ScoHDE06ORF6460P | |
| 6475 | S | S3.Pbu13063ORF173P (64% identity) | S3.ScoHDE06ORF6460P | |
| 6480 | tyrosine-type recombinase/integrase | |||
| 6485 | S | S4.BfrBFG14ORF9365P (66% identity) | S4.ScoHDE06ORF6460P | |
| 6490 | 56 aa hypothetical protein | |||
| 11845 | 114 aa hypothetical protein | |||
| 11850 | R | ScoH2383ORFGP (76% identity) | ScoHDE06ORF11870P | |
| 11855 | S | S.Bst23968ORF810P (41% identity) | S.ScoHDE06ORF11870P | |
| 11860 | transposase | |||
| 11865 | 43 aa hypothetical protein | |||
| 11870 | M | M.ScoH2383ORFGP (34% identity) | M.ScoHDE06ORF11870BP | |
| 11875 | 484 aa hypothetical protein | |||
| 11880 | site-specific integrase | |||
| 11885 | M | M.ScoH2383ORF8500P (50% identity) | M.ScoHDE06ORF11870AP | |
| 11890 | 127 aa hypothetical protein | |||
| 13740 | 136 aa hypothetical protein | |||
| 13745 | R | Pbi7880ORF1681P (97% identity) | ScoHDE06ORF13775P | |
| 13750 | 72 aa hypothetical protein | |||
| 13755 | DUF3990 domain-containing protein | |||
| 13760 | DUF3791 domain-containing protein | |||
| 13765 | S | S.PmeBin18ORFBP (55% identity) | S2.ScoHDE06ORF13775P | |
| 13770 | S | S2.Pbi7880ORF1681P (98% identity) | S1.ScoHDE06ORF13775P | |
| 13775 | M | M.PmeBin18ORFBP (97% identity) | M.ScoHDE06ORF13775P | |
| 13780 | C | C.Pbi7880ORF1681P (100% identity) | C.ScoHDE06ORF13775P | |
| 13785 | site-specific integrase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3875 | 138 aa hypothetical protein | |||
| 3880 | M | M2.PcoYF2ORF15000P (55% identity) | M1.ScoHDE06ORF3880P | |
| 3885 | M | M1.PcoYF2ORF15000P (94% identity) | M2.ScoHDE06ORF3880P | |
| 3890 | helix-turn-helix transcriptional regulator | |||
| 8750 | helix-turn-helix transcriptional regulator | |||
| 8755 | M | M1.PxyORF362P (90% identity) | M.ScoHDE06ORF8755P | |
| 8760 | type II restriction endonuclease | |||
| 8765 | R | PspE225ORF6905P (71% identity) | ScoHDE06ORF8755P | |
| 8770 | site-specific DNA-methyltransferase | |||
| 8755 | DNA adenine methylase | |||
| 8760 | R | R1.PxyORF362P (90% identity) | ScoHDE06ORF8770P | |
| 8765 | 259 aa hypothetical protein | |||
| 8770 | M | M.PvuC29ORF8595P (92% identity) | M.ScoHDE06ORF8770P | |
| 8775 | P-loop NTPase fold protein | |||
| 9320 | DUF6078 family protein | |||
| 9325 | RM | PcoORF3780BP (78% identity) | ScoHDE06ORF9325P | |
| 9330 | restriction endonuclease subunit M | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6045 | 330 aa hypothetical protein | |||
| 6050 | M | M.PcoORF3884P (49% identity) | M.ScoHDE06ORF6050P | |
| 6055 | R | PcoORF3884P (95% identity) | ScoHDE06ORF6050P | |
| 6060 | AAA family ATPase | |||
| 6165 | 76 aa hypothetical protein | |||
| 6170 | M | M.ScoH2477ORFBP (57% identity) | M.ScoHDE06ORF6170P | |
| 6175 | R | ScoHDD05ORF2880P (92% identity) | ScoHDE06ORF6170P | |
| 6180 | 74 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5310 | Rpn family recombination-promoting | |||
| 5315 | R | PmeOGmrSDP (79% identity) | ScoHDE06GmrSDP | |
| 5320 | 84 aa hypothetical protein | |||
| 12225 | (deoxy)nucleoside triphosphate | |||
| 12230 | R | ScoHDE04ORF2725P (96% identity) | ScoHDE06ORF12230P | |
| 12235 | Fic family protein | |||