Escherichia coli 2017-19-1CC |
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Putative Escherichia coli 2017-19-1CC RM systems
Ref: Hoang,H.T.T. et al. unpublished
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,686,161 bp | AP027854 |
| plasmid p2017-19-1CC_1: | 104,921 bp | AP027855 |
REBASE acronym: Eco91CC
Org_num: 72589
All begin VEE77_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| ??? | cryptic C4-dicarboxylate transporter DcuD | |||
| 38050 | M | M.SspS13ORF3945P (44% identity) | AAGNNNNNNNRTTTC | M.Eco91CCORF38050P |
| 38060 | S | S.Ecoa005ORF2260P (100% identity) | AAGNNNNNNNRTTTC | S1.Eco91CCORF38050P |
| 38070 | endoribonuclease SymE | |||
| plasmid p2017-19-1CC_1 | ||||
| 45210 | 73 aa hypothetical protein | |||
| 45220 | M | M.Eco655RtORF24455P (99% identity) | M.Eco91CCORF45220P | |
| 45230 | S | S.Eco655RtORF24455P (100% identity) | S.Eco91CCORF45220P | |
| 45240 | R | Eco655RtORF24455P (99% identity) | Eco91CCORF45220P | |
| 45250 | 168 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3330 | cell division protein DamX | |||
| 3340 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco91CCDamP |
| 3350 | ribulose-phosphate 3-epimerase | |||
| 4520 | insertion element IS1 4 protein InsA | |||
| 4530 | M | M.SspS13ORF21055P (92% identity) | M.Eco91CCORF4530P | |
| 4540 | DNA-binding protein Fis | |||
| 15820 | 252 aa hypothetical protein | |||
| 15830 | R | EcoYSP81ORFBP (100% identity) | RCSRC | Eco91CCORF15830P |
| 15840 | 81 aa hypothetical protein | |||
| 17180 | 142 aa hypothetical protein | |||
| 17190 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.Eco91CCDcmP |
| 17200 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.Eco91CCDcmP |
| 17210 | inner membrane transporter YedA | |||
| 21230 | 140 aa hypothetical protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Eco91CCORF21240P | |
| 21250 | 60 aa hypothetical protein | |||
| 37440 | phage holin, lambda family protein | |||
| 37450 | M | M.SflFF34ORF18205P (100% identity) | M.Eco91CCORF37450P | |
| 37460 | 64 aa hypothetical protein | |||
| 37510 | LexA family transcriptional regulator | |||
| 37520 | M | M.SphSfIIORF43P (100% identity) | GATC | M.Eco91CCORF37520P |
| 37530 | 83 aa hypothetical protein | |||
| 38460 | transposase | |||
| 38470 | R | EcostT2ORF19975P (100% identity) | GAAC | Eco91CCORF38470P |
| 38480 | integrase | |||
| plasmid p2017-19-1CC_1 | ||||
| 45420 | 63 aa hypothetical protein | |||
| 45430 | M | M.EfeD053ORF22855P (99% identity) | M.Eco91CCORF45430P | |
| 45440 | recombination-associated protein RdgC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15700 | 86 aa hypothetical protein | |||
| ??? | R | EcoPSS13ORFAP (100% identity) | Eco91CCORFAP | |
| 15710 | 108 aa hypothetical protein | |||