Escherichia coli PSS-08-2 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli PSS-08-2 RM systems
Ref: Hoang,H.T.T. et al. unpublished
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,768,964 bp | AP027679 |
| plasmid pPSS-08-2_1: | 222,322 bp | AP027680 |
REBASE acronym: EcoS082
Org_num: 72661
All begin VEE22_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3930 | transcriptional regulator | |||
| 3940 | R | Eco1201CCORFAP (100% identity) | EcoS082ORF3940P | |
| ??? | S | S.Eco1201CCORFAP (82% identity) | S.EcoS082ORF3940P | |
| 3960 | transposase | |||
| 7180 | 729 aa hypothetical protein | |||
| 7190 | M | M.EcoHZ13ORF17930P (100% identity) | M.EcoS082ORF7190P | |
| 7200 | S | S1.EcoHZ13ORF17930P (100% identity) | S.EcoS082ORF7190P | |
| 7210 | 395 aa hypothetical protein | |||
| 7220 | R | Sso8ORF18020P (100% identity) | EcoS082ORF7190P | |
| 7230 | 962 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20 | 148 aa hypothetical protein | |||
| 30 | M | M.Eco2474ORF4135P (100% identity) | M.EcoS082ORF30P | |
| 40 | 309 aa hypothetical protein | |||
| 9620 | 71 aa hypothetical protein | |||
| 9630 | M | M.Sbo812ORFAP (83% identity) | M.EcoS082ORF9630P | |
| 9640 | exonuclease | |||
| 16680 | 64 aa hypothetical protein | |||
| 16690 | M | M.SflFF34ORF18205P (100% identity) | M.EcoS082ORF16690P | |
| 16700 | phage holin, lambda family protein | |||
| 26190 | inner membrane transporter YedA | |||
| 26200 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.EcoS082DcmP |
| 26210 | M | M.Eco1201CCDcmP (100% identity) | CCWGG | M.EcoS082DcmP |
| 26220 | 142 aa hypothetical protein | |||
| 32750 | replication endonuclease from | |||
| 32760 | M | M.EcoL09ORF10800P (100% identity) | GATC | M.EcoS082ORF32760P |
| 32770 | 75 aa hypothetical protein | |||
| 38790 | DNA-binding protein Fis | |||
| 38800 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoS082ORF38800P |
| 38810 | 59 aa hypothetical protein | |||
| 39980 | ribulose-phosphate 3-epimerase | |||
| 39990 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS082DamP |
| 40000 | cell division protein DamX | |||
| plasmid pPSS-08-2_1 | ||||
| 46610 | 55 aa hypothetical protein | |||
| ??? | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.EcoS082ORF46620P |
| 46640 | nuclease | |||
| 47340 | 108 aa hypothetical protein | |||
| 47350 | M | M.YpsF1ORFBP (100% identity) | M.EcoS082ORF47350P | |
| 47360 | 202 aa hypothetical protein | |||
| 47610 | DNA-binding protein | |||
| 47620 | M | M.YpsF1ORFDP (84% identity) | M.EcoS082ORF47620P | |
| 47630 | 85 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17010 | serine recombinase PinE | |||
| 17020 | R | SsoSE61ORF22640P (100% identity) | YCGR | EcoS082ORF17020P |
| 17030 | 54 aa hypothetical protein | |||