Escherichia coli LR-64-2 |
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Putative Escherichia coli LR-64-2 RM systems
Ref: Hoang,H.T.T. et al. unpublished
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,652,395 bp | AP027595 |
| plasmid pLR-64-2_1: | 94,667 bp | AP027596 |
| plasmid pLR-64-2_2: | 89,277 bp | AP027597 |
REBASE acronym: EcoLR642
Org_num: 72642
All begin VEE33_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20920 | restriction endonuclease | |||
| 20930 | R | Ecos15955ORF12100P (100% identity) | RTCANNNNNNNCTTC | EcoLR642ORF20940P |
| 20940 | M | M.Ecos15955ORF12100P (100% identity) | RTCANNNNNNNCTTC | M.EcoLR642ORF20940P |
| 20950 | S | S.Ecos15955ORF12100P (100% identity) | RTCANNNNNNNCTTC | S.EcoLR642ORF20940P |
| 20960 | toxic protein SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1480 | 142 aa hypothetical protein | |||
| 1490 | M | M.SsoSE61DcmP (100% identity) | CCWGG | M.EcoLR642DcmP |
| 1500 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoLR642DcmP |
| 1510 | inner membrane transporter YedA | |||
| 5420 | 127 aa hypothetical protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.EcoLR642ORF5430P | |
| 5440 | 60 aa hypothetical protein | |||
| 30140 | cell division protein DamX | |||
| ??? | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoLR642DamP |
| 30160 | ribulose-phosphate 3-epimerase | |||
| 31310 | acrEF/envCD operon repressor | |||
| 31320 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoLR642ORF31320P |
| 31330 | DNA-binding protein Fis | |||
| plasmid pLR-64-2_1 | ||||
| 43150 | plasmid stability protein StbA | |||
| 43160 | M | M.EcoY18JORF350P (100% identity) | M.EcoLR642ORF43160P | |
| 43170 | 73 aa hypothetical protein | |||
| plasmid pLR-64-2_2 | ||||
| 44500 | 73 aa hypothetical protein | |||
| 44510 | M | M.SflN92ORF24820P (100% identity) | M.EcoLR642ORF44510P | |
| 44520 | 145 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pLR-64-2_1 | ||||
| 42970 | 67 aa hypothetical protein | |||
| 42980 | M | M.SspS13ORF650P (100% identity) | M.EcoLR642ORF42980P | |
| 42990 | R | SspS13ORF650P (100% identity) | EcoLR642ORF42980P | |
| 43000 | IS30 family transposase | |||