Escherichia coli LR-18-1 |
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Putative Escherichia coli LR-18-1 RM systems
Ref: Hoang,H.T.T. et al. unpublished
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,695,164 bp | AP027483 |
| plasmid pLR-18-1_2: | 101,919 bp | AP027485 |
REBASE acronym: EcoLR181
Org_num: 72623
All begin VEE26_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9420 | 388 aa hypothetical protein | |||
| 9430 | M | M.EcoPSJ29ORF17920P (100% identity) | M.EcoLR181ORF9430P | |
| 9440 | S | S.EcoPSJ29ORF17920P (90% identity) | S.EcoLR181ORF9430P | |
| 9450 | 227 aa hypothetical protein | |||
| 9460 | R | EcoPSJ29ORF17920P (100% identity) | EcoLR181ORF9430P | |
| 9470 | metal-dependent hydrolase | |||
| 29640 | restriction endonuclease | |||
| 29650 | R | EcoPSJ29ORF36940P (100% identity) | CCANNNNNNNRTAYG | EcoLR181ORF29660P |
| 29660 | M | M.EcoPSJ29ORF36940P (100% identity) | CCANNNNNNNRTAYG | M.EcoLR181ORF29660P |
| 29670 | S | S.EcoPSJ29ORF36940P (100% identity) | CCANNNNNNNRTAYG | S.EcoLR181ORF29660P |
| 29680 | endoribonuclease SymE | |||
| 30130 | transposase InsE for insertion sequence IS3D | |||
| ??? | M | M.EcoPSJ29ORF37430P (100% identity) | M.EcoLR181ORF30140P | |
| 30150 | S | S.EcoPSJ29ORF37430P (99% identity) | S.EcoLR181ORF30140P | |
| 30160 | R | EcoPSJ29ORF37430P (100% identity) | EcoLR181ORF30140P | |
| 30170 | oxidoreductase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8800 | phosphohydrolase | |||
| 8810 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoLR181DcmP |
| 8820 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoLR181DcmP |
| 8830 | multidrug transporter | |||
| 20510 | replication endonuclease from | |||
| 20520 | M | M.EfeC23ORF8900P (100% identity) | GATC | M.EcoLR181ORF20520P |
| 20530 | 75 aa hypothetical protein | |||
| 30060 | 216 aa hypothetical protein | |||
| 30070 | R | EcoPSJ29ORF37350P (100% identity) | EcoLR181ORF30070P | |
| 30080 | mcrBC 5-methylcytosine restriction system | |||
| 39270 | cell division protein DamX | |||
| 39280 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoLR181DamP |
| 39290 | ribulose-phosphate 3-epimerase | |||
| 40470 | acrEF/envCD operon repressor | |||
| 40480 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoLR181ORF40480P |
| 40490 | DNA-binding protein Fis | |||
| plasmid pLR-18-1_2 | ||||
| 46190 | 88 aa hypothetical protein | |||
| 46200 | R | EcoPSJ29ORF43810P (100% identity) | GCWGC | EcoLR181ORF46200P |
| 46210 | transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 29630 | GTPase | |||
| 29640 | R | EcoPSJ29MrrP (100% identity) | EcoLR181MrrP | |
| 29650 | type I restriction-modification system | |||
| 29680 | endoribonuclease SymE | |||
| 29690 | R | EcoPSJ29McrBP (100% identity) | EcoLR181McrBP | |
| 29700 | R | EcoPSJ29McrCP (100% identity) | EcoLR181McrCP | |
| 30070 | restriction endonuclease | |||
| 30080 | R | EcoPSJ29McrC2P (100% identity) | EcoLR181McrC2P | |
| 30090 | R | EcoPSJ29McrB2P (100% identity) | EcoLR181McrB2P | |
| 30100 | restriction methylase | |||