Clostridioides difficile RSS13 |
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Putative Clostridioides difficile RSS13 RM systems
Ref: Blau,K. et al. Microorganisms 11 (10), 2497 (2023)
REBASE ref # 37780
Complete sequence: 4,186,899 bp
GenBank #: CP133830
REBASE acronym: CdiRSS13
Org_num: 72557
All begin RHN76_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2810 | Z1 domain-containing protein | |||
| 2815 | S | S2.EbaES3ORF9695P (38% identity) | S1.CdiRSS13ORF2820P | |
| 2820 | M | M.Cdi21371ORFFP (100% identity) | M.CdiRSS13ORF2820P | |
| 2825 | 78 aa hypothetical protein | |||
| 2830 | S | S.Cdi21371ORFFP (98% identity) | S2.CdiRSS13ORF2820P | |
| 2835 | R | Cdi21371ORFFP (100% identity) | CdiRSS13ORF2820P | |
| 2840 | SprT family zinc-dependent metalloprotease | |||
| 16810 | IS1595 family transposase | |||
| 16815 | R | Cdi21371ORFBP (100% identity) | CdiRSS13ORF16830P | |
| 16820 | nucleotide-binding protein | |||
| 16825 | S | S.Cdi21371ORFBP (100% identity) | S.CdiRSS13ORF16830P | |
| 16830 | M | M.Cdi21371ORFBP (98% identity) | M.CdiRSS13ORF16830P | |
| 16835 | conjugal transfer protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 200 | AAA family ATPase | |||
| 205 | M | M.Cdi21371ORFGP (100% identity) | GGWCC | M.CdiRSS13ORF205P |
| 210 | R | Cdi21371ORFGP (100% identity) | GGWCC | CdiRSS13ORF205P |
| 215 | 89 aa hypothetical protein | |||
| 4680 | Rrf2 family transcriptional regulator | |||
| 4685 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.CdiRSS13ORF4685P |
| 4690 | patatin-like phospholipase family protein | |||
| 7535 | CHAP domain-containing protein | |||
| 7540 | M | M.Cdi21371ORFCP (100% identity) | CCSSGG | M.CdiRSS13ORF7540P |
| 7545 | ATP-binding protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8580 | cell division protein | |||
| 8585 | R | Cdi21371McrBP (100% identity) | CdiRSS13McrBP | |
| 8590 | R | Cdi21371McrCP (100% identity) | CdiRSS13McrCP | |
| 8595 | sigma 54-interacting transcriptional regulator | |||