Clostridioides difficile RSS11 |
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Putative Clostridioides difficile RSS11 RM systems
Ref: Blau,K. et al. Microorganisms 11 (10), 2497 (2023)
REBASE ref # 37780
Complete sequence: 4,123,534 bp
GenBank #: CP133831
REBASE acronym: CdiRSS11
Org_num: 72556
All begin RHN81_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 15500 | DUF262 domain-containing HNH endonuclease family | |||
| 15505 | R | Pdi6602ORF710241P (100% identity) | GCAYNNNNNNTTC | CdiRSS11ORF15530P |
| 15510 | 142 aa hypothetical protein | |||
| 15515 | nucleotidyltransferase domain-containing | |||
| 15520 | 102 aa hypothetical protein | |||
| 15525 | S | S.Pdi6602ORF710241P (100% identity) | GCAYNNNNNNTTC | S.CdiRSS11ORF15530P |
| 15530 | M | M.Pdi6602ORF710241P (100% identity) | GCAYNNNNNNTTC | M.CdiRSS11ORF15530P |
| 15535 | tagatose-bisphosphate aldolase subunit GatY | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7765 | 44 aa hypothetical protein | |||
| 7770 | M | M.CdiS0352ORF4245P (100% identity) | GATC | M.CdiRSS11ORF7770P |
| 7775 | 65 aa hypothetical protein | |||
| 8900 | N-acetylmuramoyl-L-alanine amidase | |||
| 8905 | M | M.Pdi6602ORF250005P (100% identity) | CTSAG | M.CdiRSS11ORF8905P |
| 8910 | response regulator transcription factor | |||
| 14220 | patatin-like phospholipase family protein | |||
| 14225 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.CdiRSS11ORF14225P |
| 14230 | Rrf2 family transcriptional regulator | |||
| 15970 | class B sortase | |||
| 15975 | M | M.Pdi6602ORF710333P (100% identity) | GCNGC | M.CdiRSS11ORF15975P |
| 15980 | DrmE family protein | |||
| 16890 | 76 aa hypothetical protein | |||
| 16895 | M | M.CdiRT010ORF11280P (100% identity) | M.CdiRSS11ORF16895P | |
| 16900 | 111 aa hypothetical protein | |||
| 18855 | 112 aa hypothetical protein | |||
| ??? | R | CdiRT010ORF9315P (100% identity) | GATC | CdiRSS11ORF18865P |
| 18865 | M | M.Pdi6602ORF790080P (100% identity) | GATC | M.CdiRSS11ORF18865P |
| 18870 | 63 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10815 | sigma 54-interacting transcriptional regulator | |||
| 10820 | R | Pdi6602McrCP (100% identity) | CdiRSS11McrCP | |
| 10825 | R | Pdi6602McrBP (100% identity) | CdiRSS11McrBP | |
| 10830 | cell division protein | |||