Clostridioides difficile RSS5 |
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Putative Clostridioides difficile RSS5 RM systems
Ref: Blau,K. et al. Microorganisms 11 (10), 2497 (2023)
REBASE ref # 37780
Complete sequence: 4,223,160 bp
GenBank #: CP133833
REBASE acronym: CdiRSS5
Org_num: 72560
All begin RHN77_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 16795 | 56 aa hypothetical protein | |||
| 16800 | R | Pdi30ORF18845P (100% identity) | ATTYNNNNNCTTC | CdiRSS5ORF16815P |
| 16805 | 423 aa hypothetical protein | |||
| 16810 | S | S.Pdi30ORF18845P (100% identity) | ATTYNNNNNCTTC | S.CdiRSS5ORF16815P |
| 16815 | M | M.CdiS122ORF3110P (100% identity) | ATTYNNNNNCTTC | M.CdiRSS5ORF16815P |
| 16820 | 115 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5335 | 58 aa hypothetical protein | |||
| 5340 | M | M.Pdi30ORF7740P (100% identity) | M.CdiRSS5ORF5340P | |
| 5345 | 73 aa hypothetical protein | |||
| 8410 | 44 aa hypothetical protein | |||
| 8415 | M | M.CdiS0352ORF4245P (100% identity) | GATC | M.CdiRSS5ORF8415P |
| 8420 | 65 aa hypothetical protein | |||
| 14970 | patatin-like phospholipase family protein | |||
| 14975 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.CdiRSS5ORF14975P |
| 14980 | Rrf2 family transcriptional regulator | |||
| 16630 | class B sortase | |||
| 16635 | M | M.Pdi6602ORF710333P (100% identity) | GCNGC | M.CdiRSS5ORF16635P |
| 16640 | DrmE family protein | |||
| 16710 | 383 aa hypothetical protein | |||
| 16715 | M | M1.Pdi30ORF18765P (100% identity) | CATCG | M1.CdiRSS5ORF16715P |
| 16720 | M | M2.CdiS122ORF3010P (100% identity) | CATCG | M2.CdiRSS5ORF16715P |
| 16725 | recombinase family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11335 | sigma 54-interacting transcriptional regulator | |||
| 11340 | R | Pdi30McrCP (100% identity) | CdiRSS5McrCP | |
| 11345 | R | Pdi30McrBP (100% identity) | CdiRSS5McrBP | |
| 11350 | cell division protein | |||