Clostridioides difficile RSS2 |
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Putative Clostridioides difficile RSS2 RM systems
Ref: Blau,K. et al. Microorganisms 11 (10), 2497 (2023)
REBASE ref # 37780
Complete sequence: 4,277,739 bp
GenBank #: CP133835
REBASE acronym: CdiRSS2
Org_num: 72558
All begin RHN78_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3895 | 81 aa hypothetical protein | |||
| 3900 | M | M.CdiEW6I (100% identity) | AYGNNNNNNCTG | M.CdiRSS2ORF3900P |
| 3905 | S | S.PdiBJ08ORFAP (100% identity) | AYGNNNNNNCTG | S.CdiRSS2ORF3900P |
| 3910 | 150 aa hypothetical protein | |||
| 3915 | 97 aa hypothetical protein | |||
| 3920 | 300 aa hypothetical protein | |||
| 3925 | R | CdiS0942ORF16230P (100% identity) | AYGNNNNNNCTG | CdiRSS2ORF3900P |
| 3930 | 47 aa hypothetical protein | |||
| 4445 | tagatose-bisphosphate aldolase subunit GatY | |||
| 4450 | M | M.Pdi6602ORF710241P (100% identity) | GCAYNNNNNNTTC | M.CdiRSS2ORF4450P |
| 4455 | S | S.Pdi6602ORF710241P (100% identity) | GCAYNNNNNNTTC | S.CdiRSS2ORF4450P |
| 4460 | 102 aa hypothetical protein | |||
| 4465 | nucleotidyltransferase domain-containing | |||
| 4470 | 142 aa hypothetical protein | |||
| 4475 | R | Cdi96664ORF3395P (100% identity) | GCAYNNNNNNTTC | CdiRSS2ORF4450P |
| 4480 | DUF262 domain-containing HNH endonuclease family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5750 | Rrf2 family transcriptional regulator | |||
| 5755 | M | M.Pdi9689I (100% identity) | CAAAAA | M.CdiRSS2ORF5755P |
| 5760 | patatin-like phospholipase family protein | |||
| 19235 | SpoVG family protein | |||
| 19240 | M | M.Cdi43255ORFAP (93% identity) | M.CdiRSS2ORF19240P | |
| 19245 | CD0415/CD1112 family protein | |||
| 19335 | antirestriction protein ArdA | |||
| 19340 | M | M.Cdi96664ORF1340P (100% identity) | M.CdiRSS2ORF19340P | |
| 19345 | 118 aa hypothetical protein | |||