Clostridioides difficile DSS189 |
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Putative Clostridioides difficile DSS189 RM systems
Ref: Blau,K. et al. Microorganisms 11 (10), 2497 (2023)
REBASE ref # 37780
Complete sequence: 4,118,325 bp
GenBank #: CP133815
REBASE acronym: Cdi9
Org_num: 72552
All begin RHN69_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3190 | tagatose-bisphosphate aldolase subunit GatY | |||
| 3195 | M | M.Pdi9689II (100% identity) | CANNNNNNNTAAAG | M.Cdi9ORF3195P |
| 3200 | S | S.Pdi9689II (100% identity) | CANNNNNNNTAAAG | S.Cdi9ORF3195P |
| 3205 | 102 aa hypothetical protein | |||
| 3210 | nucleotidyltransferase domain-containing | |||
| 3215 | 142 aa hypothetical protein | |||
| 3220 | R | CdiCd24ORF1400P (100% identity) | CANNNNNNNTAAAG | Cdi9ORF3195P |
| 3225 | DUF262 domain-containing HNH endonuclease family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2755 | 90 aa hypothetical protein | |||
| 2760 | R | CdiST42DptFP (100% identity) | Cdi9DptFP | |
| 2765 | DNA phosphorothioation-dependent restriction | |||
| 2760 | DNA phosphorothioation-dependent restriction | |||
| 2765 | R | CdiST42DptGP (100% identity) | Cdi9DptGP | |
| ??? | DNA phosphorothioation-dependent restriction protein DptH | |||
| 2765 | DNA phosphorothioation-dependent restriction | |||
| ??? | R | CdiST42DptHP (99% identity) | Cdi9DptHP | |
| 2780 | DndE family protein | |||
| ??? | DNA phosphorothioation-dependent restriction protein DptH | |||
| 2780 | M | M.CdiCd24DndEP (100% identity) | M.Cdi9DndEP | |
| 2785 | AAA family ATPase | |||
| 2780 | DndE family protein | |||
| 2785 | M | M.CdiST42DndDP (100% identity) | M.Cdi9DndDP | |
| 2790 | DNA phosphorothioation system sulfurtransferase | |||
| 2785 | AAA family ATPase | |||
| 2790 | M | M.CdiST42DndCP (100% identity) | M.Cdi9DndCP | |
| 2795 | 50 aa hypothetical protein | |||
| 4550 | Rrf2 family transcriptional regulator | |||
| 4555 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.Cdi9ORF4555P |
| 4560 | patatin-like phospholipase family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8255 | cell division protein | |||
| 8260 | R | Pdi6602McrBP (100% identity) | Cdi9McrBP | |
| 8265 | R | Cdo002McrCP (100% identity) | Cdi9McrCP | |
| 8270 | sigma 54-interacting transcriptional regulator | |||