Clostridioides difficile TDS122 |
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Putative Clostridioides difficile TDS122 RM systems
Ref: Blau,K. et al. Microorganisms 11 (10), 2497 (2023)
REBASE ref # 37780
Complete sequence: 4,161,174 bp
GenBank #: CP133818
REBASE acronym: CdiS122
Org_num: 72563
All begin RHN64_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3090 | 56 aa hypothetical protein | |||
| 3095 | R | Pdi30ORF18845P (100% identity) | ATTYNNNNNCTTC | CdiS122ORF3110P |
| 3100 | 423 aa hypothetical protein | |||
| 3105 | S | S.Pdi30ORF18845P (100% identity) | ATTYNNNNNCTTC | S.CdiS122ORF3110P |
| 3110 | M | M.CdiS0352ORF12780P (100% identity) | ATTYNNNNNCTTC | M.CdiS122ORF3110P |
| 3115 | 115 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1255 | patatin-like phospholipase family protein | |||
| 1260 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.CdiS122ORF1260P |
| 1265 | Rrf2 family transcriptional regulator | |||
| 2925 | class B sortase | |||
| 2930 | M | M.Pdi6602ORF710333P (100% identity) | GCNGC | M.CdiS122ORF2930P |
| 2935 | DrmE family protein | |||
| 3005 | 383 aa hypothetical protein | |||
| 3010 | M | M1.Pdi30ORF18765P (100% identity) | CATCG | M1.CdiS122ORF3010P |
| 3015 | M | M2.CdiS0352ORF12685P (100% identity) | CATCG | M2.CdiS122ORF3010P |
| 3020 | recombinase family protein | |||
| 7465 | 58 aa hypothetical protein | |||
| 7470 | M | M.CdiCd4ORF15725P (100% identity) | M.CdiS122ORF7470P | |
| 7475 | 69 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 16430 | sigma 54-interacting transcriptional regulator | |||
| 16435 | R | Pdi30McrCP (100% identity) | CdiS122McrCP | |
| 16440 | R | Pdi30McrBP (100% identity) | CdiS122McrBP | |
| 16445 | cell division protein | |||