Clostridioides difficile TDS116 |
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Putative Clostridioides difficile TDS116 RM systems
Ref: Blau,K. et al. Microorganisms 11 (10), 2497 (2023)
REBASE ref # 37780
Complete sequence: 4,160,350 bp
GenBank #: CP133820
REBASE acronym: Cdi6
Org_num: 72561
All begin RHN67_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 16330 | 56 aa hypothetical protein | |||
| 16335 | R | Pdi30ORF18845P (100% identity) | ATTYNNNNNCTTC | Cdi6ORF16350P |
| 16340 | 423 aa hypothetical protein | |||
| 16345 | S | S.Pdi30ORF18845P (100% identity) | ATTYNNNNNCTTC | S.Cdi6ORF16350P |
| 16350 | M | M.CdiS122ORF3110P (100% identity) | ATTYNNNNNCTTC | M.Cdi6ORF16350P |
| 16355 | 115 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1660 | 58 aa hypothetical protein | |||
| 1665 | M | M.CdiS122ORF7470P (100% identity) | M.Cdi6ORF1665P | |
| 1670 | 69 aa hypothetical protein | |||
| 14495 | patatin-like phospholipase family protein | |||
| 14500 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.Cdi6ORF14500P |
| 14505 | Rrf2 family transcriptional regulator | |||
| 16165 | class B sortase | |||
| 16170 | M | M.Pdi6602ORF710333P (100% identity) | GCNGC | M.Cdi6ORF16170P |
| 16175 | DrmE family protein | |||
| 16245 | 383 aa hypothetical protein | |||
| 16250 | M | M1.Pdi30ORF18765P (100% identity) | CATCG | M1.Cdi6ORF16250P |
| 16255 | M | M2.CdiS122ORF3010P (100% identity) | CATCG | M2.Cdi6ORF16250P |
| 16260 | recombinase family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10675 | sigma 54-interacting transcriptional regulator | |||
| 10680 | R | Pdi30McrCP (100% identity) | Cdi6McrCP | |
| 10685 | R | Pdi30McrBP (100% identity) | Cdi6McrBP | |
| 10690 | cell division protein | |||