Escherichia coli isolate F344 |
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Putative Escherichia coli isolate F344 RM systems
Ref: Leclercq,S. unpublished
REBASE ref # 37790
| Sequence length: | GenBank #: | |
| chromosome 1: | 5,135,886 bp | OY754421 |
| plasmid pF344-1: | 134,888 bp | OY754422 |
REBASE acronym: EcoF344
Org_num: 72680
All begin FGAF344_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 41410 | N-6 DNA methylase | |||
| 41420 | R | EcoKTE147ORF3062P (100% identity) | GCCNNNNNGTTT | EcoF344ORF41440P |
| 41430 | S | S.EcoS1C3ORF4992P (100% identity) | GCCNNNNNGTTT | S.EcoF344ORF41440P |
| 41440 | M | M2.EcoS1C3ORF4992P (99% identity) | GCCNNNNNGTTT | M2.EcoF344ORF41440P |
| 41450 | M | M1.EcoS1C3ORF4992P (93% identity) | GCCNNNNNGTTT | M1.EcoF344ORF41440P |
| 41460 | toll/interleukin-1 receptor domain-containing | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 4580 | DUF2556 family protein | |||
| 4590 | M | M.EcosS1ORF18905P (100% identity) | ATGCAT | M.EcoF344ORF4590P |
| 4600 | DNA-binding transcriptional regulator Fis | |||
| 18030 | phosphohydrolase | |||
| 18040 | M | M.EcoSN137DcmP (100% identity) | CCWGG | M.EcoF344DcmP |
| 18050 | V | V.EcoSN137DcmP (100% identity) | V.EcoF344DcmP | |
| 18060 | drug/metabolite exporter YedA | |||
| 25090 | 70 aa hypothetical protein | |||
| 25100 | R | EcosEC21ORF11865P (100% identity) | GTCGAC | EcoF344ORF25110P |
| 25110 | M | M.EcoS1268ORF11970P (100% identity) | GTCGAC | M.EcoF344ORF25110P |
| 25120 | DUF977 family protein | |||
| 31640 | phage antirepressor Ant | |||
| 31650 | M | M.Sfl9783ORF5079P (99% identity) | M.EcoF344ORF31650P | |
| 31660 | HNH endonuclease | |||
| 40540 | RusA family crossover junction | |||
| 40550 | M | M.EcosA32ORF3630P (100% identity) | GATC | M.EcoF344ORF40550P |
| 40560 | PerC family transcriptional regulator | |||
| 41490 | ribonuclease HI | |||
| 41500 | R | EcoWW2ORF20220P (99% identity) | EcoF344ORF41500P | |
| 41510 | NADPH-dependent aldehyde reductase Ahr | |||
| plasmid pF344-1 | ||||
| 48930 | 73 aa hypothetical protein | |||
| 48940 | M | M.Ecos69ORF26765P (100% identity) | M.EcoF344ORF48940P | |
| 48950 | conserved protein of unknown function | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 27260 | 54 aa hypothetical protein | |||
| 27270 | R | EcoSW4848GmrSD2P (100% identity) | EcoF344GmrSDP | |
| 27280 | 63 aa hypothetical protein | |||
| 41460 | toll/interleukin-1 receptor domain-containing | |||
| 41470 | R | EcoF374MrrP (95% identity) | EcoF344MrrP | |
| 41480 | AAA domain-containing protein | |||