Escherichia coli isolate F1005 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli isolate F1005 RM systems
Ref: Leclercq,S. unpublished
REBASE ref # 37790
| Sequence length: | GenBank #: | |
| chromosome 1: | 4,753,317 bp | OY754353 |
| plasmid pF1005-1: | 112,380 bp | OY754354 |
REBASE acronym: EcoF1005
Org_num: 72671
All begin FGAF1005_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 38030 | DUF262 domain-containing protein | |||
| 38040 | R | EcoPSJ12ORF22640P (100% identity) | EcoF1005ORF38050P | |
| 38050 | M | M.EcoPSJ12ORF22640P (64% identity) | M.EcoF1005ORF38050AP | |
| 38060 | IS3 family transposase | |||
| 38070 | IS3 family transposase IS3 | |||
| 38080 | M | M.EcoYPE10ORF21230P (76% identity) | M.EcoF1005ORF38050BP | |
| 38090 | S | S.EcoYPE10ORF21230P (99% identity) | S.EcoF1005ORF38050P | |
| 38100 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 4580 | DUF2556 family protein | |||
| 4590 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoF1005ORF4590P |
| 4600 | DNA-binding transcriptional regulator Fis | |||
| 10730 | TraR/DksA family transcriptional regulator | |||
| 10740 | M | M.EcoE1779ORF1754P (100% identity) | GATC | M.EcoF1005ORF10740P |
| 10750 | replication endonuclease | |||
| 11960 | 82 aa hypothetical protein | |||
| 11970 | M | M.EcoTCM3e1ORF6790P (100% identity) | M.EcoF1005ORF11970P | |
| 11980 | PerC family transcriptional regulator | |||
| 18040 | phosphohydrolase | |||
| 18050 | M | M.SspS13DcmP (100% identity) | CCWGG | M.EcoF1005DcmP |
| 18060 | V | V.SsoSE61DcmP (99% identity) | V.EcoF1005DcmP | |
| 18070 | drug/metabolite exporter YedA | |||
| 34860 | DUF1317 domain-containing protein | |||
| 34870 | M | M.Sbo812ORFAP (100% identity) | GATC | M.EcoF1005ORF34870P |
| 34880 | 71 aa hypothetical protein | |||
| 38710 | McrC family protein | |||
| 38720 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoF1005ORF38730P |
| 38730 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoF1005ORF38730P |
| 38740 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoF1005ORF38730P |
| 38750 | IS21 family transposase ISEc12 | |||
| plasmid pF1005-1 | ||||
| 44730 | conserved protein of unknown function | |||
| 44740 | M | M.StyR64ORFAP (100% identity) | M.EcoF1005ORF44740P | |
| 44750 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 38100 | endoribonuclease SymE | |||
| 38110 | R | EcoSTEC508GmrSDP (100% identity) | EcoF1005GmrSDP | |
| 38120 | DUF1127 domain-containing protein | |||
| 38690 | 84 aa hypothetical protein | |||
| 38700 | R | EcosS3McrBP (100% identity) | EcoF1005McrBP | |
| 38710 | R | EcosS9McrCP (99% identity) | EcoF1005McrCP | |
| 38720 | 579 aa hypothetical protein | |||