Nodosilinea species E11 |
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Putative Nodosilinea species E11 RM systems
Ref: Xin,R. unpublished
REBASE ref # 37691
| Sequence length: | GenBank #: | |
| Chromosome: | 5,459,063 bp | CP136520 |
| plasmid pA: | 497,759 bp | CP136514 |
| plasmid pC: | 43,338 bp | CP136516 |
| plasmid pD: | 24,317 bp | CP136517 |
REBASE acronym: NspE11
Org_num: 72285
All begin RRF56_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13995 | 199 aa hypothetical protein | |||
| 14000 | R | Nsp2111ORF28420P (63% identity) | NspE11ORF14015P | |
| 14005 | type II toxin-antitoxin system Phd/YefM family | |||
| 14010 | type II toxin-antitoxin system VapC family | |||
| 14015 | M | M.Nsp2111ORF28420P (71% identity) | M.NspE11ORF14015P | |
| 14020 | S | S.NcyWK1ORF3670P (37% identity) | S.NspE11ORF14015P | |
| 14025 | AAA family ATPase | |||
| plasmid pC | ||||
| 2235 | MobF family relaxase | |||
| 2240 | R | Psp7ORF15390P (56% identity) | NspE11ORF2265P | |
| 2245 | 114 aa hypothetical protein | |||
| 2250 | ATP-binding protein | |||
| 2255 | 344 aa hypothetical protein | |||
| 2260 | S | S.Tsp3ORF3474P (42% identity) | S.NspE11ORF2265P | |
| 2265 | M | M.Lsp3755ORF65520P (86% identity) | M.NspE11ORF2265P | |
| 2270 | tyrosine-type recombinase/integrase | |||
| plasmid pD | ||||
| 2530 | chemotaxis protein CheB | |||
| 2535 | S | M.Aci21ORF61050P (25% identity) | S.NspE11ORF2535P | |
| 2415 | AAA family ATPase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3710 | DEAD/DEAH box helicase | |||
| 3715 | RM | CwaWHORF6410P (55% identity) | NspE11ORF3715P | |
| 4075 | adenosylcobinamide-phosphate synthase CbiB | |||
| 4080 | M | M.Lsp6406II (62% identity) | M.NspE11ORF4080P | |
| 4085 | R | PaesPA2ORF33320P (79% identity) | NspE11ORF4080P | |
| 4090 | translation initiation factor IF-3 | |||
| 5970 | helix-turn-helix transcriptional regulator | |||
| 5975 | R | NspE11ORF17055P (40% identity) | NspE11ORF5975P | |
| 5980 | 188 aa hypothetical protein | |||
| 12465 | 93 aa hypothetical protein | |||
| 12470 | M | M1.HensORFGP (20% identity) | M.NspE11ORF12470P | |
| 12475 | type II toxin-antitoxin system VapC family | |||
| 17050 | 200 aa hypothetical protein | |||
| 17055 | R | Pmu1806ORFPP (50% identity) | NspE11ORF17055P | |
| 17060 | SDR family oxidoreductase | |||
| 18470 | 179 aa hypothetical protein | |||
| 18475 | M | M.Pte30ORF12795P (83% identity) | M.NspE11ORF18475P | |
| 18480 | EcsC family protein | |||
| 22305 | NUDIX domain-containing protein | |||
| 22310 | M | M.Pte30ORF16040P (79% identity) | M.NspE11ORF22310P | |
| 22315 | NAD+ synthase | |||
| plasmid pA | ||||
| 1790 | DUF488 domain-containing protein | |||
| 1795 | RM | Pte30ORF17815P (82% identity) | NspE11ORF1795P | |
| 1800 | 579 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18025 | GNAT family N-acetyltransferase | |||
| 18030 | R | NspE11MrrP (76% identity) | NspE11Mrr2P | |
| 18035 | 99 aa hypothetical protein | |||
| 24080 | DUF3146 family protein | |||
| 24085 | R | NspE11Mrr2P (76% identity) | NspE11MrrP | |
| 24090 | helix-turn-helix transcriptional regulator | |||