Salmonella enterica subsp. enterica serovar Enteritidis JNQH940 |
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Putative Salmonella enterica subsp. enterica serovar Enteritidis JNQH940 RM systems
Ref: Hao,M. unpublished
REBASE ref # 32044
| Sequence length: | GenBank #: | |
| Chromosome: | 4,745,289 bp | CP136141 |
| plasmid pJNQH940-1: | 127,061 bp | CP136142 |
REBASE acronym: Sen40
Org_num: 72343
All begin RVN03_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2360 | DUF5655 domain-containing protein | |||
| 2365 | R | StySBLI (100% identity) | GGYANNNNNNTCG | Sen40ORF2375P |
| 2370 | S | S.StySBLI (100% identity) | GGYANNNNNNTCG | S.Sen40ORF2375P |
| 2375 | M | M.StySBLI (10% identity) | GGYANNNNNNTCG | M.Sen40ORF2375P |
| 2380 | NERD domain-containing protein/DEAD/DEAH box | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2240 | IS3 family transposase | |||
| 2245 | R | SspSAL045ORF19515P (100% identity) | GAAC | Sen40ORF2245P |
| 2250 | YebC/PmpR family DNA-binding transcriptional | |||
| 8000 | phosphohydrolase | |||
| 8005 | M | M.SspZ69DcmP (100% identity) | CCWGG | M.Sen40DcmP |
| 8010 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.Sen40DcmP |
| 8015 | drug/metabolite exporter YedA | |||
| 12935 | RusA family crossover junction | |||
| 12940 | M | M.Ssp89ORF1824P (100% identity) | GATC | M.Sen40ORF12940P |
| 12945 | PerC family transcriptional regulator | |||
| 19840 | DNA-binding transcriptional regulator Fis | |||
| 19845 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen40ORF19845P |
| 19850 | DUF2556 family protein | |||
| plasmid pJNQH940-1 | ||||
| 23405 | 103 aa hypothetical protein | |||
| 23410 | M | M.Sso3794ORF26595P (100% identity) | SAY | M.Sen40ORF23410P |
| 23415 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4450 | MFS transporter | |||
| 4455 | M | M.SspSAL045ORF17295P (100% identity) | CAGAG | M.Sen40ORF4455P |
| 4460 | R | SspSAL045ORF17295P (99% identity) | CAGAG | Sen40ORF4455P |
| 4465 | small effector SsaA | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16660 | phosphoadenosine phosphosulfate reductase family | |||
| 16665 | M | M.Sen8271ORF1499P (100% identity) | GATC | M.Sen40ORF16665P |
| 16670 | DUF3850 domain-containing protein | |||