Bacteroides caccae H-1617 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Bacteroides caccae H-1617 RM systems
Ref: Gellman,R.H. et al. unpublished
REBASE ref # 37627
Complete sequence: 5,112,756 bp
GenBank #: CP134819
REBASE acronym: BcaH1617
Org_num: 72109
All begin RJT08_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 9955 | helix-turn-helix transcriptional regulator | |||
| 9960 | R | BfrBOB25ORF5030P (100% identity) | BcaH1617ORFCP | |
| 9965 | DUF5655 domain-containing protein | |||
| 9970 | DUF262 domain-containing protein | |||
| 9975 | M | M.BfrBOB25ORF5030P (100% identity) | M.BcaH1617ORFCP | |
| 9980 | RhuM family protein | |||
| 9985 | S | S1.BcaH1617ORF9975P (100% identity) | S1.BcaH1617ORFCP | |
| ??? | S | S3.Msa17ORFA2P (90% identity) | S2.BcaH1617ORFCP | |
| 10000 | S | S1.Pdi244ORF10590P (93% identity) | S3.BcaH1617ORFCP | |
| 10005 | tyrosine-type recombinase/integrase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 550 | toprim domain-containing protein | |||
| 555 | M | M.Bfr300ORF6685P (99% identity) | M.BcaH1617ORF555P | |
| 560 | TraM recognition domain-containing protein | |||
| 550 | toprim domain-containing protein | |||
| ??? | M | M.PmeBin104ORFEP (100% identity) | M.BcaH1617ORFEP | |
| 560 | TraM recognition domain-containing protein | |||
| 885 | phage antirepressor KilAC domain-containing | |||
| 890 | M | M.PmeBin9ORFDP (93% identity) | M.BcaH1617ORFGP | |
| 895 | 115 aa hypothetical protein | |||
| 900 | helix-turn-helix domain-containing protein | |||
| 905 | C | C.Bno12C05ORF2202P (100% identity) | C.BcaH1617ORF910P | |
| 910 | RM | Bfr300ORF6360P (100% identity) | BcaH1617ORF910P | |
| 915 | M | M.Bno12C05ORF2202P (100% identity) | M.BcaH1617ORF910P | |
| 920 | AAA family ATPase | |||
| 900 | helix-turn-helix domain-containing protein | |||
| ??? | C | C.Bno12C05ORF2202P (81% identity) | C.BcaH1617ORFFP | |
| 910 | RM | Bfr300ORF6360P (100% identity) | BcaH1617ORFFP | |
| 915 | M | M.Bno12C05ORF2202P (100% identity) | M.BcaH1617ORFFP | |
| 920 | AAA family ATPase | |||
| 1750 | transposase | |||
| ??? | RM | PmeBin96ORFBP (99% identity) | BcaH1617ORFDP | |
| 1760 | 55 aa hypothetical protein | |||
| 1750 | transposase | |||
| 1755 | RM | BcaH1617ORFDP (97% identity) | BcaH1617ORF1755P | |
| 1760 | 55 aa hypothetical protein | |||
| 4135 | Bro-N domain-containing protein | |||
| 4140 | M | M.Msa17ORFHP (99% identity) | M.BcaH1617ORF4140P | |
| 4145 | C | C.Bca43185aORF3125P (100% identity) | C.BcaH1617ORF4140P | |
| 4150 | DUF4248 domain-containing protein | |||
| 10735 | 241 aa hypothetical protein | |||
| 10740 | M | M.PvuC06ORF1788P (100% identity) | M.BcaH1617ORFBP | |
| 10745 | DUF5045 domain-containing protein | |||
| 10735 | 241 aa hypothetical protein | |||
| 10740 | M | M.PvuC06ORF1788P (100% identity) | M.BcaH1617ORF10740P | |
| 10745 | DUF5045 domain-containing protein | |||
| 13000 | 118 aa hypothetical protein | |||
| ??? | M | M.Bsp5141ORFEP (96% identity) | M.BcaH1617ORFAP | |
| 13010 | 82 aa hypothetical protein | |||
| 13000 | 118 aa hypothetical protein | |||
| 13005 | M | M.BcaH1617ORFAP (97% identity) | M.BcaH1617ORF13005P | |
| 13010 | 82 aa hypothetical protein | |||
| 14815 | 315 aa hypothetical protein | |||
| 14820 | M | M.PmeBin3ORFCP (100% identity) | M.BcaH1617ORF14820P | |
| 14825 | helix-turn-helix domain containing protein | |||
| 16445 | site-specific integrase | |||
| 16450 | R | PmeBin35ORFAP (100% identity) | CCATC | BcaH1617ORF16455P |
| 16455 | M | M2.PmeBin35ORFAP (100% identity) | CCATC | M1.BcaH1617ORF16455P |
| 16460 | M | M1.PmeBin35ORFAP (100% identity) | CCATC | M2.BcaH1617ORF16455P |
| 16465 | carbamoyl-phosphate synthase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9875 | DUF6078 family protein | |||
| 9880 | R | Msa17McrBP (99% identity) | BcaH1617McrBP | |
| 9885 | R | PmeBin96McrCP (99% identity) | BcaH1617McrCP | |
| 9890 | 247 aa hypothetical protein | |||