Escherichia coli TUM11356 |
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Putative Escherichia coli TUM11356 RM systems
Ref: Komori,K. et al. unpublished
REBASE ref # 37603
| Sequence length: | GenBank #: | |
| Chromosome: | 4,963,886 bp | CP135656 |
| plasmid pMTY11356_IncF: | 160,382 bp | CP135657 |
REBASE acronym: Eco356
Org_num: 72051
All begin RS169_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7865 | type IV toxin-antitoxin system AbiEi family | |||
| 7870 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Eco356ORF7875P |
| 7875 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.Eco356ORF7875P |
| 7880 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Eco356ORF7875P |
| 7885 | ash family protein | |||
| plasmid pMTY11356_IncF | ||||
| 24865 | IS1-like element IS1A family transposase | |||
| 24870 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNNCTGG | Eco356ORF24880P |
| 24875 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S1.Eco356ORF24880P |
| 24880 | M | M.SenceORFJP (99% identity) | CAAYNNNNNNCTGG | M.Eco356ORF24880P |
| 24885 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9800 | McrC family protein | |||
| 9805 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco356ORF9810P |
| 9810 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Eco356ORF9810P |
| 9815 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Eco356ORF9810P |
| 9820 | helix-turn-helix domain-containing protein | |||
| 10090 | 174 aa hypothetical protein | |||
| 10095 | M | M.Sen5773ORF4471P (100% identity) | RCCGGY | M.Eco356ORF10095P |
| 10100 | ATP-binding protein | |||
| 10105 | response regulator receiver domain | |||
| 10110 | R | Ecos19ORF20635P (100% identity) | Eco356ORF10110P | |
| 10115 | 97 aa hypothetical protein | |||
| 13775 | BREX-1 system phosphatase PglZ type A | |||
| 13780 | RM | EcosR9ORF15335P (100% identity) | CANCATC | Eco356ORF13780P |
| 13785 | BREX system P-loop protein BrxC | |||
| 15335 | cell division protein DamX | |||
| 15340 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco356DamP |
| 15345 | ribulose-phosphate 3-epimerase | |||
| 15925 | DUF2556 family protein | |||
| 15930 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco356ORF15930P |
| 15935 | DNA-binding transcriptional regulator Fis | |||
| 23895 | antiterminator Q family protein | |||
| 23900 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M.Eco356ORF23900P |
| 23905 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R1.Eco356ORF23900P |
| 23910 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R2.Eco356ORF23900P |
| 23915 | TrmB family transcriptional regulator | |||
| 23915 | TrmB family transcriptional regulator | |||
| 23920 | M | M.EcoK1516ORFHP (100% identity) | A | M.Eco356ORF23920P |
| 23940 | 39 aa hypothetical protein | |||
| plasmid pMTY11356_IncF | ||||
| 24780 | 73 aa hypothetical protein | |||
| 24785 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco356ORF24785P |
| 24790 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9790 | glycosyltransferase family 2 protein | |||
| 9795 | R | EcosS3McrBP (100% identity) | Eco356McrBP | |
| 9800 | R | EcosS9McrCP (100% identity) | Eco356McrCP | |
| 9805 | Alw26I/Eco31I/Esp3I family type II restriction | |||