Escherichia coli DH5-alpha-pD25466-pBACpAK-COL-FM1-C2-10-1-PPY |
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Putative Escherichia coli DH5-alpha-pD25466-pBACpAK-COL-FM1-C2-10-1-PPY RM systems
Ref: Goodman,R.N. et al. J Microbiol Methods 213, 106813 (2023)
REBASE ref # 37506
| Sequence length: | GenBank #: | |
| Chromosome: | 4,584,776 bp | CP125710 |
| plasmid pD25466: | 115,297 bp | CP125708 |
REBASE acronym: EcoY
Org_num: 71612
All begin QL119_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16135 | endoribonuclease SymE | |||
| 16140 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.EcoYORF16145P |
| 16145 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.EcoYORF16145P |
| 16150 | R | Esp17TGCORF18925P (100% identity) | AACNNNNNNGTGC | EcoYORF16145P |
| 16155 | adenine/cytosine-specific restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3970 | drug/metabolite exporter YedA | |||
| 3975 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.EcoYDcmP |
| 3980 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoYDcmP |
| 3985 | phosphohydrolase | |||
| 10525 | DNA-binding transcriptional regulator Fis | |||
| 10530 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoYORF10530P |
| 10535 | DUF2556 family protein | |||
| 11150 | ribulose-phosphate 3-epimerase | |||
| 11155 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoYDamP |
| 11160 | cell division protein DamX | |||
| 22370 | DUF4060 family protein | |||
| 22375 | M | M.SenHNK130ORF1185P (95% identity) | M.EcoYORF22375P | |
| 22380 | DUF1317 family protein | |||
| plasmid pD25466 | ||||
| 70 | 56 aa hypothetical protein | |||
| 75 | M | M.SmaBWH35ORF25885P (100% identity) | M.EcoYORF75P | |
| 80 | 73 aa hypothetical protein | |||
| 465 | incFII family plasmid replication initiator | |||
| 470 | M | M.SmaKC004ORF48960P (93% identity) | M.EcoYORF470P | |
| 475 | 297 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16120 | 978 aa hypothetical protein | |||
| 16125 | R | SenHNK130McrCP (100% identity) | EcoYMcrCP | |
| 16130 | R | SenHNK130McrBP (100% identity) | EcoYMcrBP | |
| 16135 | endoribonuclease SymE | |||
| 16150 | type I restriction-modification system | |||
| 16155 | R | SenHNK130MrrP (100% identity) | EcoYMrrP | |
| 16160 | GTPase | |||
| 21830 | site-specific DNA recombinase | |||
| 21835 | R | SsoSE61ORF22640P (100% identity) | YCGR | EcoYORF21835P |
| 21840 | isocitrate/isopropylmalate family dehydrogenase | |||