Escherichia coli DH5-alpha-pD25466-pBACpAK-COL-FM1-C2-10-1-1 |
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Putative Escherichia coli DH5-alpha-pD25466-pBACpAK-COL-FM1-C2-10-1-1 RM systems
Ref: Goodman,R.N. et al. J Microbiol Methods 213, 106813 (2023)
REBASE ref # 37506
| Sequence length: | GenBank #: | |
| Chromosome: | 4,584,772 bp | CP125713 |
| plasmid pD25466: | 115,296 bp | CP125712 |
REBASE acronym: Eco011
Org_num: 71611
All begin QL113_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13540 | endoribonuclease SymE | |||
| 13545 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.Eco011ORF13550P |
| 13550 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco011ORF13550P |
| 13555 | R | Esp17TGCORF18925P (100% identity) | AACNNNNNNGTGC | Eco011ORF13550P |
| 13560 | adenine/cytosine-specific restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1380 | drug/metabolite exporter YedA | |||
| 1385 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.Eco011DcmP |
| 1390 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco011DcmP |
| 1395 | phosphohydrolase | |||
| 7930 | DNA-binding transcriptional regulator Fis | |||
| 7935 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco011ORF7935P |
| 7940 | DUF2556 family protein | |||
| 8555 | ribulose-phosphate 3-epimerase | |||
| 8560 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco011DamP |
| 8565 | cell division protein DamX | |||
| 19780 | DUF4060 family protein | |||
| 19785 | M | M.SenHNK130ORF1185P (95% identity) | M.Eco011ORF19785P | |
| 19790 | DUF1317 family protein | |||
| plasmid pD25466 | ||||
| 130 | incFII family plasmid replication initiator | |||
| 135 | M | M.SmaKC004ORF48960P (93% identity) | M.Eco011ORF135P | |
| 140 | 297 aa hypothetical protein | |||
| 385 | 56 aa hypothetical protein | |||
| 390 | M | M.SmaBWH35ORF25885P (100% identity) | M.Eco011ORF390P | |
| 395 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13525 | 978 aa hypothetical protein | |||
| 13530 | R | SenHNK130McrCP (100% identity) | Eco011McrCP | |
| 13535 | R | SenHNK130McrBP (100% identity) | Eco011McrBP | |
| 13540 | endoribonuclease SymE | |||
| 13555 | type I restriction-modification system | |||
| 13560 | R | SenHNK130MrrP (100% identity) | Eco011MrrP | |
| 13565 | GTPase | |||
| 19240 | site-specific DNA recombinase | |||
| 19245 | R | SsoSE61ORF22640P (100% identity) | YCGR | Eco011ORF19245P |
| 19250 | isocitrate/isopropylmalate family dehydrogenase | |||