Salmonella enterica subsp. enterica serovar Rissen D15 |
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Putative Salmonella enterica subsp. enterica serovar Rissen D15 RM systems
Ref: Wetchasirigul,S. unpublished
REBASE ref # 37480
Complete sequence: 4,911,285 bp
GenBank #: CP133398
REBASE acronym: SenD15
Org_num: 71521
All begin RCO23_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 20225 | restriction endonuclease | |||
| 20230 | R | SenW714ORF20250P (100% identity) | GAGNNNNNNRTAYG | SenD15ORF20235P |
| 20235 | M | M.SenW714ORF20250P (100% identity) | GAGNNNNNNRTAYG | M.SenD15ORF20235P |
| 20240 | S | S.SenW714ORF20250P (100% identity) | GAGNNNNNNRTAYG | S.SenD15ORF20235P |
| 20245 | endoribonuclease SymE | |||
| 20505 | HNH endonuclease signature motif containing | |||
| 20510 | M | M.SenW714ORF20525P (100% identity) | M.SenD15ORF20510P | |
| 20515 | S | S.SenW714ORF20525P (100% identity) | S.SenD15ORF20510P | |
| 20520 | R | SenW714ORF20525P (100% identity) | SenD15ORF20510P | |
| 20525 | 165 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2520 | DUF2556 family protein | |||
| 2525 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenD15ORF2525P |
| 2530 | DNA-binding transcriptional regulator Fis | |||
| 9730 | phosphohydrolase | |||
| 9735 | M | M.SspZ54DcmP (100% identity) | CCWGG | M.SenD15DcmP |
| 9740 | V | V.SenW714DcmP (100% identity) | V.SenD15DcmP | |
| 9745 | drug/metabolite exporter YedA | |||
| 19940 | phage lysis protein EssD | |||
| 19945 | M | M.SenW714ORF19970P (100% identity) | M.SenD15ORF19945P | |
| 19950 | 67 aa hypothetical protein | |||
| 19980 | LexA family transcriptional regulator | |||
| 19985 | M | M.Sso90ORF15820P (100% identity) | GATC | M.SenD15ORF19985P |
| 19990 | PerC family transcriptional regulator | |||
| 20365 | YebC/PmpR family DNA-binding transcriptional | |||
| 20370 | R | SenW714ORF20385P (100% identity) | SenD15ORF20370P | |
| 20375 | 64 aa hypothetical protein | |||
| 20535 | integrase | |||
| 20540 | R | SenW714ORF20555P (100% identity) | GAAC | SenD15ORF20540P |
| 20545 | integrase arm-type DNA-binding domain-containing | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 17680 | small effector SsaA | |||
| 17685 | R | SenW714ORF17715P (100% identity) | CAGAG | SenD15ORF17690P |
| 17690 | M | M.SenW714ORF17715P (100% identity) | CAGAG | M.SenD15ORF17690P |
| 17695 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20220 | BrnT family toxin | |||
| 20225 | R | SenW714MrrP (100% identity) | SenD15MrrP | |
| 20230 | type I restriction-modification system | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5840 | 3-5 exonuclease | |||
| 5845 | M | M.SenW714ORF5945P (100% identity) | GATC | M.SenD15ORF5845P |
| 5850 | replication endonuclease | |||