Escherichia fergusonii 22C021LT |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia fergusonii 22C021LT RM systems
Ref: Kakita,T. et al. unpublished
REBASE ref # 37455
| Sequence length: | GenBank #: | |
| Chromosome: | 4,542,216 bp | AP028832 |
| plasmid p22C021LT2: | 127,982 bp | AP028834 |
| plasmid p22C021LT3: | 95,169 bp | AP028835 |
REBASE acronym: Efe1LT
Org_num: 71417
All begin Ef22C021LT_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 32730 | 69 aa hypothetical protein | |||
| 32740 | S | S.SflN101ORF19075P (100% identity) | GAACNNNNNTGC | S.Efe1LTORF32750P |
| 32750 | M | M.Sen6640ORF2690P (100% identity) | GAACNNNNNTGC | M.Efe1LTORF32750P |
| 32760 | R | EmaC12ORF18910P (100% identity) | GAACNNNNNTGC | Efe1LTORF32750P |
| 32770 | 107 aa hypothetical protein | |||
| 34990 | 119 aa hypothetical protein | |||
| 35000 | R | Efe9LTORF34980P (100% identity) | Efe1LTORF35010P | |
| 35010 | M | M.SflTORF4636P (98% identity) | M.Efe1LTORF35010P | |
| 35020 | S | S.Efe9LTORF34980P (100% identity) | S.Efe1LTORF35010P | |
| 35030 | endoribonuclease SymE | |||
| plasmid p22C021LT2 | ||||
| 44060 | 75 aa hypothetical protein | |||
| 44070 | M | M.Efe7LTORF43470P (100% identity) | GAGNNNNNRTGA | M.Efe1LTORF44070P |
| 44080 | S | S.Efe7LTORF43470P (100% identity) | GAGNNNNNRTGA | S.Efe1LTORF44070P |
| 44090 | R | Efe9LTORF43980P (100% identity) | GAGNNNNNRTGA | Efe1LTORF44070P |
| 44100 | 168 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2240 | bifunctional isocitrate dehydrogenase | |||
| 2250 | M | M.EfeTORF2210P (100% identity) | CCWGG | M.Efe1LTORF2250P |
| 2260 | glyoxylate bypass operon transcriptional | |||
| 25360 | protein NinF | |||
| 25370 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Efe1LTORF25370P |
| 25380 | 200 aa hypothetical protein | |||
| 35180 | anti-phage ZorAB system protein ZorA | |||
| 35190 | M | M.Efe9LTDndBP (100% identity) | M.Efe1LTDndBP | |
| 35200 | DNA phosphorothioation system sulfurtransferase | |||
| 35190 | DNA sulfur modification protein DndB | |||
| 35200 | M | M.Efe9LTDndCP (100% identity) | M.Efe1LTDndCP | |
| 35210 | DNA sulfur modification protein DndD | |||
| 35200 | DNA phosphorothioation system sulfurtransferase | |||
| 35210 | M | M.Efe9LTDndDP (100% identity) | M.Efe1LTDndDP | |
| 35220 | 117 aa hypothetical protein | |||
| 35210 | DNA sulfur modification protein DndD | |||
| 35220 | M | M.Efe9LTDndEP (100% identity) | M.Efe1LTDndEP | |
| 35230 | DGQHR domain-containing protein | |||
| 35240 | 174 aa hypothetical protein | |||
| 35250 | R | Efe9LTDptHP (100% identity) | Efe1LTDptHP | |
| 35260 | 440 aa hypothetical protein | |||
| 35250 | 1695 aa hypothetical protein | |||
| 35260 | R | Efe9LTDptGP (100% identity) | Efe1LTDptGP | |
| 35270 | 549 aa hypothetical protein | |||
| 35260 | 440 aa hypothetical protein | |||
| 35270 | R | Efe9LTDptFP (100% identity) | Efe1LTDptFP | |
| 35280 | integrase arm-type DNA-binding domain-containing | |||
| 36540 | DNA-binding transcriptional regulator Fis | |||
| 36550 | M | M.EfeTORF37040P (100% identity) | ATGCAT | M.Efe1LTORF36550P |
| 36560 | DUF2556 family protein | |||
| 37530 | ribulose-phosphate 3-epimerase | |||
| 37540 | M | M.EfeEF04DamP (100% identity) | GATC | M.Efe1LTDamP |
| 37550 | cell division protein DamX | |||
| plasmid p22C021LT2 | ||||
| 44290 | 97 aa hypothetical protein | |||
| 44300 | M | M.Efe9LTORF44210P (100% identity) | M.Efe1LTORF44300P | |
| 44310 | recombination-associated protein RdgC | |||
| plasmid p22C021LT3 | ||||
| 44770 | DUF1281 domain-containing protein | |||
| 44780 | M | M.SspPIBORF23080P (100% identity) | M.Efe1LTORF44780P | |
| 44790 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 35030 | endoribonuclease SymE | |||
| 35040 | R | Efe9LTGmrSDP (100% identity) | Efe1LTGmrSDP | |
| 35050 | DUF1127 domain-containing protein | |||
| 35100 | DUF445 domain-containing protein | |||
| 35120 | R | Efe9LTMrrP (100% identity) | Efe1LTMrrP | |
| 35130 | 228 aa hypothetical protein | |||