Salmonella enterica subsp. enterica serovar Rissen D7 |
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Putative Salmonella enterica subsp. enterica serovar Rissen D7 RM systems
Ref: Wetchasirigul,S. unpublished
REBASE ref # 37480
Complete sequence: 4,911,285 bp
GenBank #: CP133286
REBASE acronym: SenD7
Org_num: 71522
All begin RCH04_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 20220 | restriction endonuclease | |||
| 20225 | R | SenW714ORF20250P (100% identity) | GAGNNNNNNRTAYG | SenD7ORF20230P |
| 20230 | M | M.SenW714ORF20250P (100% identity) | GAGNNNNNNRTAYG | M.SenD7ORF20230P |
| 20235 | S | S.SenW714ORF20250P (100% identity) | GAGNNNNNNRTAYG | S.SenD7ORF20230P |
| 20240 | endoribonuclease SymE | |||
| 20500 | HNH endonuclease signature motif containing | |||
| 20505 | M | M.SenW714ORF20525P (100% identity) | M.SenD7ORF20505P | |
| 20510 | S | S.SenW714ORF20525P (100% identity) | S.SenD7ORF20505P | |
| 20515 | R | SenW714ORF20525P (100% identity) | SenD7ORF20505P | |
| 20520 | 165 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2520 | DUF2556 family protein | |||
| 2525 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenD7ORF2525P |
| 2530 | DNA-binding transcriptional regulator Fis | |||
| 9730 | phosphohydrolase | |||
| 9735 | M | M.SspZ54DcmP (100% identity) | CCWGG | M.SenD7DcmP |
| 9740 | V | V.SenW714DcmP (100% identity) | V.SenD7DcmP | |
| 9745 | drug/metabolite exporter YedA | |||
| 19935 | phage lysis protein EssD | |||
| 19940 | M | M.SenW714ORF19970P (100% identity) | M.SenD7ORF19940P | |
| 19945 | 67 aa hypothetical protein | |||
| 19975 | LexA family transcriptional regulator | |||
| 19980 | M | M.Sso90ORF15820P (100% identity) | GATC | M.SenD7ORF19980P |
| 19985 | PerC family transcriptional regulator | |||
| 20360 | YebC/PmpR family DNA-binding transcriptional | |||
| 20365 | R | SenW714ORF20385P (100% identity) | SenD7ORF20365P | |
| 20370 | 64 aa hypothetical protein | |||
| 20530 | integrase | |||
| 20535 | R | SenW714ORF20555P (100% identity) | GAAC | SenD7ORF20535P |
| 20540 | integrase arm-type DNA-binding domain-containing | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 17675 | small effector SsaA | |||
| 17680 | R | SenW714ORF17715P (100% identity) | CAGAG | SenD7ORF17685P |
| 17685 | M | M.SenW714ORF17715P (100% identity) | CAGAG | M.SenD7ORF17685P |
| 17690 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20215 | BrnT family toxin | |||
| 20220 | R | SenW714MrrP (100% identity) | SenD7MrrP | |
| 20225 | type I restriction-modification system | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5840 | 3-5 exonuclease | |||
| 5845 | M | M.SenW714ORF5945P (100% identity) | GATC | M.SenD7ORF5845P |
| 5850 | replication endonuclease | |||