Lactococcus cremoris JM4 |
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Putative Lactococcus cremoris JM4 RM systems
Ref: McDonnell,B. unpublished
REBASE ref # 36430
| Sequence length: | GenBank #: | |
| Chromosome: | 2,419,867 bp | CP015909 |
| plasmid pJM4A: | 90,767 bp | CP122373 |
| plasmid pJM4E: | 14,140 bp | CP122375 |
| plasmid pJM4G: | 12,180 bp | CP122377 |
| plasmid pJM4H: | 6,209 bp | CP016732 |
REBASE acronym: LcrJM4
Org_num: 50048
All begin LLJM4_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1143 | restriction endonuclease subunit S | |||
| 3330 | R | Lcr147ORF6375P (99% identity) | LcrJM4ORF1151P | |
| 1146 | IS982-like element IS982B family transposase | |||
| 1147 | S | S1.LlaJM4oldORF1151P (100% identity) | S2.LcrJM4ORF1151P | |
| 1149 | IS3-like element IS981 family transposase | |||
| 1150 | S | S1.LlaJM4FORFDP (100% identity) | S1.LcrJM4ORF1151P | |
| 1151 | M | M.LlaJM4FORFDP (100% identity) | M.LcrJM4ORF1151P | |
| 1152 | DNA gyrase subunit A | |||
| plasmid pJM4A | ||||
| 4695 | 248 aa hypothetical protein | |||
| 4700 | R | LlaFG2ORF666P (99% identity) | CAABNNNNNNTTAA | LcrJM4IIIP |
| 4705 | M | M.EfaC94ORF14290P (99% identity) | CAABNNNNNNTTAA | M.LcrJM4III |
| 4710 | S | S.LlaO184III (66% identity) | CAABNNNNNNTTAA | S.LcrJM4III |
| 4715 | 455 aa hypothetical protein | |||
| plasmid pJM4E | ||||
| 5780 | RepB family plasmid replication initiator | |||
| 5785 | S | S.LlaSKORF6P (90% identity) | S.LcrJM4ORF5790P | |
| 5790 | RM | LlaSKORF6P (99% identity) | LcrJM4ORF5790P | |
| 5795 | 303 aa hypothetical protein | |||
| plasmid pJM4G | ||||
| 5935 | 214 aa hypothetical protein | |||
| 5940 | S | S.Lla103I (99% identity) | YTCANNNNNNRTTA | S.LcrJM4IV |
| 5945 | helix-turn-helix transcriptional regulator | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2730 | 69 aa hypothetical protein | |||
| 2735 | M | M.Cdi21356ORFHP (61% identity) | M.LcrJM4ORF2735P | |
| 2740 | DEAD/DEAH box helicase | |||
| 4610 | phospholipase D-like domain-containing protein | |||
| 4615 | RM | Lcr147VI (99% identity) | GMAGG | LcrJM4II |
| 4620 | XRE family transcriptional regulator | |||
| plasmid pJM4H | ||||
| 6000 | 480 aa hypothetical protein | |||
| 6005 | R | SspHYO08ORF2970P (90% identity) | GCTAGC | LcrJM4IP |
| 6010 | M | M.SspHYO08ORF2970P (93% identity) | GCTAGC | M.LcrJM4I |