Escherichia coli LZSFT34 |
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Putative Escherichia coli LZSFT34 RM systems
Ref: Zhang,L. and Li,Y. unpublished
REBASE ref # 33123
| Sequence length: | GenBank #: | |
| Chromosome: | 4,945,961 bp | CP132728 |
| plasmid p2_FT34: | 108,306 bp | CP132731 |
| plasmid pTetX4_FT34: | 112,510 bp | CP132730 |
REBASE acronym: EcoT34
Org_num: 71150
All begin RA171_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4415 | restriction system-associated AAA family ATPase | |||
| 4420 | S | S.Sen64034II (100% identity) | AGCNNNNNCTTC | S.EcoT34ORF4425P |
| 4425 | M | M.Sen64034II (100% identity) | AGCNNNNNCTTC | M.EcoT34ORF4425P |
| 4430 | HTH-type transcriptional regulator Cbl | |||
| 15985 | NADPH-dependent aldehyde reductase Ahr | |||
| 15995 | R | SdyFF10ORF20075P (100% identity) | CCANNNNNNNCTC | EcoT34ORF16005P |
| 16000 | S | S.EcoW26ORF3070P (100% identity) | CCANNNNNNNCTC | S.EcoT34ORF16005P |
| 16005 | M | M.EcoW26ORF3070P (100% identity) | CCANNNNNNNCTC | M.EcoT34ORF16005P |
| 16010 | DUF4942 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4095 | drug/metabolite exporter YedA | |||
| 4100 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoT34DcmP |
| 4105 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoT34DcmP |
| 4110 | phosphohydrolase | |||
| 10855 | DNA-binding transcriptional regulator Fis | |||
| 10860 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoT34ORF10860P |
| 10865 | DUF2556 family protein | |||
| 11385 | ribulose-phosphate 3-epimerase | |||
| 11390 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoT34DamP |
| 11395 | cell division protein DamX | |||
| 16025 | McrC family protein | |||
| 16030 | R | SdyFF10ORF20055P (100% identity) | EcoT34ORF16030P | |
| 16035 | HNH endonuclease | |||
| 18010 | 67 aa hypothetical protein | |||
| 18015 | M | M.EcoU013ORF19155P (100% identity) | M.EcoT34ORF18015P | |
| 18020 | phage holin, lambda family | |||
| 23995 | TrmB family transcriptional regulator | |||
| 24000 | M | M.EcoTob1ORF18280P (99% identity) | M.EcoT34ORF24000P | |
| 24015 | cell envelope integrity protein TolA | |||
| plasmid p2_FT34 | ||||
| 25630 | 101 aa hypothetical protein | |||
| 25635 | M | M.EcoSTEC405ORF25310P (98% identity) | SAY | M.EcoT34ORF25635P |
| 25640 | 73 aa hypothetical protein | |||
| plasmid pTetX4_FT34 | ||||
| 24755 | 101 aa hypothetical protein | |||
| 24760 | M | M.EcoC0140ORF25835P (100% identity) | M.EcoT34ORF24760P | |
| 24765 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16015 | IS3-like element IS3 family transposase | |||
| 16020 | R | SflSTLE4McrBP (100% identity) | EcoT34McrBP | |
| 16025 | R | SdyFF10McrCP (100% identity) | EcoT34McrCP | |
| 16030 | HNH endonuclease | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2710 | 134 aa hypothetical protein | |||
| 2715 | M | M.EcoPEC0010ORF10760P (100% identity) | M.EcoT34ORF2715P | |
| 2720 | 3-5 exonuclease | |||
| 21770 | 81 aa hypothetical protein | |||
| 21775 | M | M.Eco13C14ORF5950P (94% identity) | M.EcoT34ORF21775P | |
| 21780 | 3-5 exonuclease | |||