Escherichia coli R9 |
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Putative Escherichia coli R9 RM systems
Ref: Jaen-Luchoro,D. et al. Microorganisms 11 (7), 1622 (2023)
REBASE ref # 37298
| Sequence length: | GenBank #: | |
| Chromosome: | 5,100,590 bp | CP107164 |
| plasmid pR9-658-1: | 110,949 bp | CP107165 |
| plasmid pR9-658-2: | 36,037 bp | CP107166 |
REBASE acronym: EcosR9
Org_num: 69870
All begin OGM38_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19935 | endoribonuclease SymE | |||
| 19940 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcosR9ORF19950P |
| 19945 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcosR9ORF19950P |
| 19950 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcosR9ORF19950P |
| 19955 | restriction endonuclease | |||
| 21755 | ash family protein | |||
| 21760 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcosR9ORF21765P |
| 21765 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcosR9ORF21765P |
| 21770 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcosR9ORF21765P |
| 21775 | type IV toxin-antitoxin system AbiEi family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 340 | 72 aa hypothetical protein | |||
| 345 | M | M.KpnYN1ORFGP (89% identity) | M.EcosR9ORF345P | |
| 350 | helix-turn-helix domain-containing protein | |||
| 570 | helix-turn-helix domain-containing protein | |||
| 575 | M | M.EcoST69ORF23470P (100% identity) | M.EcosR9ORF575P | |
| 580 | 71 aa hypothetical protein | |||
| 6050 | drug/metabolite exporter YedA | |||
| 6055 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcosR9DcmP |
| 6060 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcosR9DcmP |
| 6065 | phosphohydrolase | |||
| 13210 | DNA-binding transcriptional regulator Fis | |||
| 13215 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcosR9ORF13215P |
| 13220 | DUF2556 family protein | |||
| 13810 | ribulose-phosphate 3-epimerase | |||
| 13815 | M | M.SspPIBDamP (100% identity) | GATC | M.EcosR9DamP |
| 13820 | cell division protein DamX | |||
| 19590 | helix-turn-helix domain-containing protein | |||
| 19595 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcosR9ORF19595P |
| 19600 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcosR9ORF19595P |
| 19605 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcosR9ORF19595P |
| 19610 | McrC family protein | |||
| plasmid pR9-658-2 | ||||
| 25595 | IS6-like element IS26 family transposase | |||
| 25600 | M | M.UbapRSB107ORFAP (72% identity) | M.EcosR9ORF25600P | |
| 25605 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19605 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 19610 | R | EcosS9McrCP (100% identity) | EcosR9McrCP | |
| 19615 | R | EcosS3McrBP (100% identity) | EcosR9McrBP | |
| 19620 | glycosyltransferase | |||
| 19950 | type I restriction-modification system subunit | |||
| 19955 | R | Ecou021MrrP (100% identity) | EcosR9MrrP | |
| 19960 | BrnT family toxin | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pR9-658-1 | ||||
| 25480 | 76 aa hypothetical protein | |||
| 25485 | M | M.Ecoppa6ORF24465P (99% identity) | M.EcosR9ORF25485P | |
| 25490 | 269 aa hypothetical protein | |||