Escherichia coli S6 |
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Putative Escherichia coli S6 RM systems
Ref: Jaen-Luchoro,D. et al. Microorganisms 11 (7), 1622 (2023)
REBASE ref # 37298
| Sequence length: | GenBank #: | |
| Chromosome: | 5,332,681 bp | CP107134 |
| plasmid pS6-220-1: | 139,731 bp | CP107135 |
| plasmid pS6-220-2: | 92,311 bp | CP107136 |
REBASE acronym: EcoS6
Org_num: 69878
All begin OGM48_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3455 | endoribonuclease SymE | |||
| 3460 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoS6ORF3470P |
| 3465 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoS6ORF3470P |
| 3470 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoS6ORF3470P |
| 3475 | restriction endonuclease | |||
| 5280 | ash family protein | |||
| 5285 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoS6ORF5290P |
| 5290 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoS6ORF5290P |
| 5295 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoS6ORF5290P |
| 5300 | type IV toxin-antitoxin system AbiEi family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3110 | helix-turn-helix domain-containing protein | |||
| 3115 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoS6ORF3115P |
| 3120 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoS6ORF3115P |
| 3125 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoS6ORF3115P |
| 3130 | McrC family protein | |||
| 8770 | 71 aa hypothetical protein | |||
| 8775 | M | M.KpnYN1ORFGP (89% identity) | M.EcoS6ORF8775P | |
| 8780 | helix-turn-helix domain-containing protein | |||
| 11030 | TrmB family transcriptional regulator | |||
| 11035 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoS6ORF11035P |
| 11050 | DUF3927 family protein | |||
| 14265 | sialate O-acetylesterase | |||
| 14270 | M | M1.EcosS3ORF2905P (100% identity) | M1.EcoS6ORF14270P | |
| 14275 | TrmB family transcriptional regulator | |||
| 14280 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R1.EcoS6ORF14270P |
| 14285 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R2.EcoS6ORF14270P |
| 14290 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M2.EcoS6ORF14270P |
| 14295 | antiterminator Q family protein | |||
| 15170 | drug/metabolite exporter YedA | |||
| 15175 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoS6DcmP |
| 15180 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoS6DcmP |
| 15185 | phosphohydrolase | |||
| 18940 | 121 aa hypothetical protein | |||
| 18945 | R | Sso8033ORF3755P (100% identity) | CCWGG | EcoS6ORF18950P |
| 18950 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.EcoS6ORF18950P |
| 18955 | 257 aa hypothetical protein | |||
| 19080 | phage lysis protein EssD | |||
| 19085 | M | M.EcosR6ORF7985P (100% identity) | M.EcoS6ORF19085P | |
| 19090 | 95 aa hypothetical protein | |||
| 19125 | LexA family transcriptional regulator | |||
| 19130 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcoS6ORF19130P |
| 19135 | PerC family transcriptional regulator | |||
| 22925 | DNA-binding transcriptional regulator Fis | |||
| 22930 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS6ORF22930P |
| 22935 | DUF2556 family protein | |||
| 23525 | ribulose-phosphate 3-epimerase | |||
| 23530 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS6DamP |
| 23535 | cell division protein DamX | |||
| plasmid pS6-220-1 | ||||
| 27185 | 73 aa hypothetical protein | |||
| 27190 | M | M.KpnVA569ORF28145P (100% identity) | M.EcoS6ORF27190P | |
| 27195 | 103 aa hypothetical protein | |||
| plasmid pS6-220-2 | ||||
| 27385 | 104 aa hypothetical protein | |||
| 27390 | M | M.Sen4346ORF22715P (100% identity) | M.EcoS6ORF27390P | |
| 27395 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3125 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 3130 | R | EcosS9McrCP (100% identity) | EcoS6McrCP | |
| 3135 | R | EcosS3McrBP (100% identity) | EcoS6McrBP | |
| 3140 | glycosyltransferase | |||
| 3470 | type I restriction-modification system subunit | |||
| 3475 | R | Ecou021MrrP (100% identity) | EcoS6MrrP | |
| 3480 | BrnT family toxin | |||