Clostridioides difficile DSM 28521 |
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Putative Clostridioides difficile DSM 28521 RM systems
Ref: Riedel,T. et al. unpublished
REBASE ref # 19234
Complete sequence: 4,141,656 bp
GenBank #: CP016155
REBASE acronym: Cdi28521
Org_num: 69539
All begin CDIF28521_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3295 | 687 aa hypothetical protein | |||
| 3296 | R | Pdi6602ORF710241P (100% identity) | GCAYNNNNNNTTC | Cdi28521ORF3301P |
| 3297 | 142 aa hypothetical protein | |||
| 3298 | DNA polymerase subunit beta | |||
| 3299 | 102 aa hypothetical protein | |||
| 3300 | S | S.Pdi6602ORF710241P (100% identity) | GCAYNNNNNNTTC | S.Cdi28521ORF3301P |
| 3301 | M | M.Pdi6602ORF710241P (100% identity) | GCAYNNNNNNTTC | M.Cdi28521ORF3301P |
| 3302 | tagatose-bisphosphate aldolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1081 | 111 aa hypothetical protein | |||
| 1082 | M | M.PdiZ31ORF1645P (100% identity) | M.Cdi28521ORF1082P | |
| 1083 | 69 aa hypothetical protein | |||
| 1631 | 39 aa hypothetical protein | |||
| 1632 | M | M.CdiS0352ORF4245P (100% identity) | GATC | M.Cdi28521ORF1632P |
| 1633 | 65 aa hypothetical protein | |||
| 1856 | N-acetylmuramoyl-l-alanine amidase | |||
| 1857 | M | M.Pdi6602ORF250005P (100% identity) | CTSAG | M.Cdi28521ORF1857P |
| 1858 | two-component response regulator | |||
| 2933 | 79 aa hypothetical protein | |||
| 2934 | M | M.PdiZ31ORF1645P (100% identity) | M.Cdi28521ORF2934P | |
| 2935 | 91 aa hypothetical protein | |||
| 3037 | phospholipase | |||
| 3038 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.Cdi28521ORF3038P |
| 3039 | badm/rrf2 family transcriptional regulator | |||
| 3389 | 33 aa hypothetical protein | |||
| 3390 | M | M.Pdi6602ORF710333P (100% identity) | GCNGC | M.Cdi28521ORF3390P |
| 3391 | 872 aa hypothetical protein | |||
| 3913 | 112 aa hypothetical protein | |||
| ??? | R | CdiRT010ORF9315P (100% identity) | GATC | Cdi28521ORF3915P |
| 3915 | M | M.Pdi6602ORF790080P (100% identity) | GATC | M.Cdi28521ORF3915P |
| 3916 | 63 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2249 | sigma-54-dependent transcriptional regulator | |||
| 2250 | R | Pdi6602McrCP (100% identity) | Cdi28521McrCP | |
| 2251 | R | Pdi6602McrBP (100% identity) | Cdi28521McrBP | |
| 2252 | cell division protein FtsZ | |||