Salmonella enterica subsp. enterica 4_29_19 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica 4_29_19 RM systems
Ref: Fortini,D. et al. unpublished
REBASE ref # 37335
Complete sequence: 4,919,121 bp
GenBank #: CP126310
REBASE acronym: Sen42919
Org_num: 70838
All begin QMY14_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 11175 | exoribonuclease II | |||
| 11180 | M | M.Ror24724I (100% identity) | ACGNNNNNNCTG | M.Sen42919ORF11180P |
| 11185 | S | S.Ror24724I (100% identity) | ACGNNNNNNCTG | S.Sen42919ORF11180P |
| 11190 | R | Ror24724IP (100% identity) | ACGNNNNNNCTG | Sen42919ORF11180P |
| 11195 | ISL3-like element ISKpn25 family transposase | |||
| 20195 | restriction endonuclease | |||
| 20200 | R | SenW714ORF20250P (100% identity) | GAGNNNNNNRTAYG | Sen42919ORF20205P |
| 20205 | M | M.SenW714ORF20250P (100% identity) | GAGNNNNNNRTAYG | M.Sen42919ORF20205P |
| 20210 | S | S.SenW714ORF20250P (100% identity) | GAGNNNNNNRTAYG | S.Sen42919ORF20205P |
| 20215 | endoribonuclease SymE | |||
| 20480 | HNH endonuclease signature motif containing | |||
| 20485 | M | M.SenW714ORF20525P (100% identity) | M.Sen42919ORF20485P | |
| 20490 | S | S.SenW714ORF20525P (100% identity) | S.Sen42919ORF20485P | |
| 20495 | R | SenW714ORF20525P (100% identity) | Sen42919ORF20485P | |
| 20500 | 165 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2030 | cell division protein DamX | |||
| 2035 | M | M.StyTDamP (100% identity) | GATC | M.Sen42919DamP |
| 2040 | ribulose-phosphate 3-epimerase | |||
| 2520 | DUF2556 family protein | |||
| 2525 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen42919ORF2525P |
| 2530 | DNA-binding transcriptional regulator Fis | |||
| 9690 | phosphohydrolase | |||
| 9695 | M | M.SspZ54DcmP (100% identity) | CCWGG | M.Sen42919DcmP |
| 9700 | V | V.SenW714DcmP (100% identity) | V.Sen42919DcmP | |
| 9705 | drug/metabolite exporter YedA | |||
| 19910 | phage lysis protein EssD | |||
| 19915 | M | M.SenW714ORF19970P (100% identity) | M.Sen42919ORF19915P | |
| 19920 | 67 aa hypothetical protein | |||
| 19950 | LexA family transcriptional regulator | |||
| 19955 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Sen42919ORF19955P |
| 19960 | PerC family transcriptional regulator | |||
| 20335 | YebC/PmpR family DNA-binding transcriptional | |||
| 20340 | R | SenW714ORF20385P (100% identity) | Sen42919ORF20340P | |
| 20345 | 64 aa hypothetical protein | |||
| 20510 | integrase | |||
| 20515 | R | SenW714ORF20555P (100% identity) | GAAC | Sen42919ORF20515P |
| 20520 | integrase arm-type DNA-binding domain-containing | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 17650 | small effector SsaA | |||
| 17655 | R | SenW714ORF17715P (100% identity) | CAGAG | Sen42919ORF17660P |
| 17660 | M | M.SenW714ORF17715P (100% identity) | CAGAG | M.Sen42919ORF17660P |
| 17665 | MFS transporter | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5830 | 3-5 exonuclease | |||
| 5835 | M | M.SenW714ORF5945P (100% identity) | GATC | M.Sen42919ORF5835P |
| 5840 | replication endonuclease | |||