Escherichia coli TUM9812 |
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Putative Escherichia coli TUM9812 RM systems
Ref: Ikegaya,K. et al. unpublished
REBASE ref # 34910
| Sequence length: | GenBank #: | |
| Chromosome: | 5,096,614 bp | CP128926 |
| plasmid pMTY9812_IncF: | 66,878 bp | CP128928 |
| plasmid pMTY9812_IncHI1B: | 93,747 bp | CP128927 |
| plasmid pMTY9812_IncN: | 48,249 bp | CP128929 |
REBASE acronym: Eco9812
Org_num: 69004
All begin QVM98_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5810 | IS1 family transposase | |||
| 5815 | R | EcoM9812ORF11290P (100% identity) | Eco9812ORF5825P | |
| 5820 | S | S.EfeEF31ORF5230P (100% identity) | S.Eco9812ORF5825P | |
| 5825 | M | M.EfeEF31ORF5230P (100% identity) | M.Eco9812ORF5825P | |
| 5830 | integrase core domain-containing protein | |||
| 15990 | transcription factor | |||
| 15995 | M | M.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | M.Eco9812ORF15995P |
| 16000 | S | S.Ecos2020ORFCP (100% identity) | YTCANNNNNNGTTY | S.Eco9812ORF15995P |
| 16005 | toxin-antitoxin system toxin DNA ADP-ribosyl | |||
| 16010 | toxin-antitoxin system antitoxin DNA ADP-ribosyl | |||
| 16015 | R | Sbo49812IP (100% identity) | YTCANNNNNNGTTY | Eco9812ORF15995P |
| 16020 | SprT family zinc-dependent metalloprotease | |||
| plasmid pMTY9812_IncHI1B | ||||
| 26205 | type II toxin-antitoxin system Phd/YefM family | |||
| 26210 | M | M.EcoPSS10ORF26960P (100% identity) | M.Eco9812ORF26210P | |
| 26215 | S | S.EcoM9812ORF50560P (100% identity) | S.Eco9812ORF26210P | |
| 26220 | R | EcoPK8277ORF23015P (100% identity) | Eco9812ORF26210P | |
| 26225 | 3-phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1730 | cell division protein DamX | |||
| 1735 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco9812DamP |
| 1740 | ribulose-phosphate 3-epimerase | |||
| 2355 | DUF2556 family protein | |||
| 2360 | M | M.EcoM9812ORF4540P (100% identity) | ATGCAT | M.Eco9812ORF2360P |
| 2365 | DNA-binding transcriptional regulator Fis | |||
| 9455 | phosphohydrolase | |||
| 9460 | M | M.SspS13DcmP (100% identity) | CCWGG | M.Eco9812DcmP |
| 9465 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Eco9812DcmP |
| 9470 | drug/metabolite exporter YedA | |||
| 10330 | TrmB family transcriptional regulator | |||
| 10335 | M | M.EcoM9812ORF20030P (100% identity) | M.Eco9812ORF10335P | |
| 10350 | TerB family tellurite resistance protein | |||
| 12170 | TrmB family transcriptional regulator | |||
| 12175 | M | M.EcoM9812ORF23550P (100% identity) | M.Eco9812ORF12175P | |
| 12190 | holin | |||
| 13315 | holin | |||
| 13330 | M | M.EcoM9812ORF25780P (100% identity) | M.Eco9812ORF13330P | |
| 13335 | TrmB family transcriptional regulator | |||
| 15245 | phage holin, lambda family | |||
| 15250 | M | M.EcoM9812ORF29490P (100% identity) | M.Eco9812ORF15250P | |
| 15255 | 67 aa hypothetical protein | |||
| 16620 | holin | |||
| 16635 | M | M.EcoM9812ORF32200P (100% identity) | M.Eco9812ORF14375P | |
| 16640 | TrmB family transcriptional regulator | |||
| 17620 | replication endonuclease | |||
| 17625 | M | M.SflP099ORF15630P (100% identity) | GATC | M.Eco9812ORF17625P |
| 17630 | TraR/DksA family transcriptional regulator | |||
| 18145 | phage holin, lambda family | |||
| 18150 | M | M.EcoM9812ORF35170P (100% identity) | M.Eco9812ORF18150P | |
| 18155 | TrmB family transcriptional regulator | |||
| plasmid pMTY9812_IncF | ||||
| 26720 | 73 aa hypothetical protein | |||
| 26725 | M | M.EcoM9812ORF51490P (100% identity) | M.Eco9812ORF26725P | |
| 26730 | 101 aa hypothetical protein | |||
| plasmid pMTY9812_IncHI1B | ||||
| 25990 | IS4-like element IS421 family transposase | |||
| 25995 | R | SflFF67ORF22305P (100% identity) | GCWGC | Eco9812ORF25995P |
| 26000 | XRE family transcriptional regulator | |||
| plasmid pMTY9812_IncN | ||||
| 26820 | EAL domain-containing protein | |||
| 26825 | R | YpsR1ORFAP (100% identity) | CCWGG | Eco9812ORF26830P |
| 26830 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.Eco9812ORF26830P |
| 26835 | IS1 family transposase | |||