Escherichia coli TUM13773 |
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Putative Escherichia coli TUM13773 RM systems
Ref: Ikegaya,K. et al. unpublished
REBASE ref # 34910
| Sequence length: | GenBank #: | |
| Chromosome: | 5,120,006 bp | CP128912 |
| plasmid pMTY13773_IncF: | 179,124 bp | CP128913 |
| plasmid pMTY13773_IncN: | 51,776 bp | CP128915 |
| plasmid pMTY13773_p0111: | 91,453 bp | CP128914 |
REBASE acronym: Eco13773
Org_num: 68989
All begin QVN05_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20905 | restriction endonuclease | |||
| 20910 | M | M.EcosA4II (100% identity) | GATANNNNNNTCC | M.Eco13773ORF20910P |
| 20915 | S | S.EcosA4II (100% identity) | GATANNNNNNTCC | S.Eco13773ORF20910P |
| 20920 | R | EcosA4IIP (100% identity) | GATANNNNNNTCC | Eco13773ORF20910P |
| 20925 | endoribonuclease SymE | |||
| 21175 | DUF4942 domain-containing protein | |||
| 21180 | M | M.EcosA4I (100% identity) | M.Eco13773ORF21180P | |
| 21185 | S | S2.EcoNGF1ORF15560P (100% identity) | S1.Eco13773ORF21180P | |
| 21190 | IS110-like element ISEc45 family transposase | |||
| ??? | S | S.EcosA4I (40% identity) | S2.Eco13773ORF21180P | |
| 21200 | R | EcosA33IP (100% identity) | Eco13773ORF21180P | |
| 21210 | NADPH-dependent aldehyde reductase Ahr | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1690 | cell division protein DamX | |||
| 1695 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco13773DamP |
| 1700 | ribulose-phosphate 3-epimerase | |||
| 2290 | DUF2556 family protein | |||
| 2295 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco13773ORF2295P |
| 2300 | DNA-binding transcriptional regulator Fis | |||
| 6695 | DUF1382 family protein | |||
| 6700 | M | M.Esp911AORF3194P (100% identity) | GATC | M.Eco13773ORF6700P |
| 6705 | PerC family transcriptional regulator | |||
| 9800 | phosphohydrolase | |||
| 9805 | M | M.EcosA33DcmP (100% identity) | CCWGG | M.Eco13773DcmP |
| 9810 | V | V.EcosA4DcmP (100% identity) | V.Eco13773DcmP | |
| 9815 | drug/metabolite exporter YedA | |||
| 13220 | 51 aa hypothetical protein | |||
| 13240 | M | M.SflJ17BORF23540P (100% identity) | A | M.Eco13773ORF13240P |
| 13245 | TrmB family transcriptional regulator | |||
| 16185 | replication endonuclease | |||
| 16190 | M | M.EcoZ01ORF1668P (100% identity) | GATC | M.Eco13773ORF16190P |
| 16195 | TraR/DksA family transcriptional regulator | |||
| 21155 | HNH endonuclease | |||
| 21160 | R | EcosA4ORF22115P (100% identity) | Eco13773ORF21160P | |
| 21165 | McrC family protein | |||
| plasmid pMTY13773_IncF | ||||
| 25630 | 73 aa hypothetical protein | |||
| 25635 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco13773ORF25635P |
| 25640 | 103 aa hypothetical protein | |||
| plasmid pMTY13773_IncN | ||||
| 26435 | EAL domain-containing protein | |||
| 26440 | R | YpsR1ORFAP (100% identity) | CCWGG | Eco13773ORF26445P |
| 26445 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.Eco13773ORF26445P |
| 26450 | IS1 family transposase | |||
| plasmid pMTY13773_p0111 | ||||
| 26105 | recombination-associated protein RdgC | |||
| 26110 | M | M.Sen94620ORF28085P (100% identity) | M.Eco13773ORF26110P | |
| 26125 | SPFH domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20900 | BrnT family toxin | |||
| 20905 | R | EcosA4MrrP (100% identity) | Eco13773MrrP | |
| 20910 | class I SAM-dependent DNA methyltransferase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14160 | NinE family protein | |||
| 14165 | M | M.EcosC25ORF16305P (99% identity) | GATC | M.Eco13773ORF14165P |
| 14170 | recombination protein NinB | |||