Escherichia coli TUM13882 |
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Putative Escherichia coli TUM13882 RM systems
Ref: Ikegaya,K. et al. unpublished
REBASE ref # 34910
| Sequence length: | GenBank #: | |
| Chromosome: | 5,074,617 bp | CP128897 |
| plasmid pMTY13882_IncF: | 121,712 bp | CP128898 |
| plasmid pMTY13882_IncN: | 50,951 bp | CP128899 |
REBASE acronym: Eco13882
Org_num: 68991
All begin QVN06_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18915 | NADPH-dependent aldehyde reductase Ahr | |||
| 18925 | R | EcoZ151ORF20915P (94% identity) | GARANNNNNNNTGG | Eco13882ORF18935P |
| 18930 | S | S.EcoI605ORF22375P (99% identity) | GARANNNNNNNTGG | S.Eco13882ORF18935P |
| 18935 | M | M.EcoZ151ORF20915P (100% identity) | GARANNNNNNNTGG | M.Eco13882ORF18935P |
| 18940 | DUF4942 domain-containing protein | |||
| 19160 | endoribonuclease SymE | |||
| 19165 | S | S.EcoZ151ORF20685P (100% identity) | CCANNNNNNNNNTTGG | S.Eco13882ORF19170P |
| 19170 | M | M.SspS13ORF3945P (100% identity) | CCANNNNNNNNNTTGG | M.Eco13882ORF19170P |
| 19175 | R | EcoZ151ORF20685P (100% identity) | CCANNNNNNNNNTTGG | Eco13882ORF19170P |
| 19180 | DUF262 domain-containing protein | |||
| plasmid pMTY13882_IncF | ||||
| 24925 | type II toxin-antitoxin system antitoxin CcdA | |||
| 24930 | R | SenBR076ORFFP (30% identity) | CAAYNNNNNNCTGG | Eco13882ORF24940P |
| 24935 | S | S.SenceORFJP (99% identity) | CAAYNNNNNNCTGG | S.Eco13882ORF24940P |
| 24940 | M | M.SenceORFJP (99% identity) | CAAYNNNNNNCTGG | M.Eco13882ORF24940P |
| 24945 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5605 | drug/metabolite exporter YedA | |||
| 5610 | V | V.EcosE1DcmP (74% identity) | V.Eco13882DcmP | |
| 5615 | M | M.EcosE1DcmP (100% identity) | CCWGG | M.Eco13882DcmP |
| 5620 | phosphohydrolase | |||
| 13165 | DNA-binding transcriptional regulator Fis | |||
| 13170 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.Eco13882ORF13170P |
| 13175 | DUF2556 family protein | |||
| 13700 | ribulose-phosphate 3-epimerase | |||
| 13705 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco13882DamP |
| 13710 | cell division protein DamX | |||
| plasmid pMTY13882_IncF | ||||
| 24880 | 73 aa hypothetical protein | |||
| 24885 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco13882ORF24885P |
| 24890 | 103 aa hypothetical protein | |||
| plasmid pMTY13882_IncN | ||||
| 25065 | EAL domain-containing protein | |||
| 25070 | R | YpsR1ORFAP (100% identity) | CCWGG | Eco13882ORF25075P |
| 25075 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.Eco13882ORF25075P |
| 25080 | IS1 family transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18940 | DUF4942 domain-containing protein | |||
| 18945 | R | EcoZ151McrBP (100% identity) | Eco13882McrBP | |
| 18950 | R | EcoZ151McrCP (100% identity) | Eco13882McrCP | |
| 18955 | HNH endonuclease | |||
| 19145 | DUF1127 domain-containing protein | |||
| ??? | R | EcoCh1GmrSDP (100% identity) | Eco13882GmrSDP | |
| 19160 | endoribonuclease SymE | |||