Escherichia coli TUM13881 |
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Putative Escherichia coli TUM13881 RM systems
Ref: Ikegaya,K. et al. unpublished
REBASE ref # 34910
| Sequence length: | GenBank #: | |
| Chromosome: | 4,916,220 bp | CP128907 |
| plasmid pMTY13881_IncF: | 101,368 bp | CP128908 |
| plasmid pMTY13881_IncN: | 50,134 bp | CP128909 |
REBASE acronym: Eco13881
Org_num: 68990
All begin QVN13_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16405 | endoribonuclease SymE | |||
| 16410 | R | Ecou021ORF19870P (99% identity) | RTACNNNNGTG | Eco13881ORF16420P |
| 16415 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.Eco13881ORF16420P |
| 16420 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.Eco13881ORF16420P |
| 16425 | restriction endonuclease | |||
| 18225 | ash family protein | |||
| 18230 | S | S.Ecos131ORF6575P (74% identity) | S.Eco13881ORF18235P | |
| 18235 | M | M.EcosS9ORF4930P (100% identity) | M.Eco13881ORF18235P | |
| 18240 | R | EcosS9ORF4930P (100% identity) | Eco13881ORF18235P | |
| 18245 | type IV toxin-antitoxin system AbiEi family | |||
| plasmid pMTY13881_IncF | ||||
| 24605 | IS1-like element IS1A family transposase | |||
| 24610 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNCTGG | Eco13881ORF24620P |
| 24615 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S1.Eco13881ORF24620P |
| 24620 | M | M.SenceORFJP (99% identity) | CAAYNNNNNCTGG | M.Eco13881ORF24620P |
| 24625 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3500 | drug/metabolite exporter YedA | |||
| 3505 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco13881DcmP |
| 3510 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco13881DcmP |
| 3515 | phosphohydrolase | |||
| 10270 | DNA-binding transcriptional regulator Fis | |||
| 10275 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco13881ORF10275P |
| 10280 | DUF2556 family protein | |||
| 10870 | ribulose-phosphate 3-epimerase | |||
| 10875 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco13881DamP |
| 10880 | cell division protein DamX | |||
| 16045 | helix-turn-helix domain-containing protein | |||
| 16050 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Eco13881ORF16050P |
| 16055 | M | M1.EcosEC4ORF20110P (77% identity) | M2.Eco13881ORF16050P | |
| 16060 | R | EcosS9ORF2810P (93% identity) | Eco13881ORF16050P | |
| 16065 | McrC family protein | |||
| 21720 | 71 aa hypothetical protein | |||
| 21725 | M | M.KpnYN1ORFGP (89% identity) | M.Eco13881ORF21725P | |
| 21730 | helix-turn-helix transcriptional regulator | |||
| 23970 | TrmB family transcriptional regulator | |||
| 23975 | M | M.EcosS9ORF10680P (100% identity) | A | M.Eco13881ORF23975P |
| 23990 | DUF3927 family protein | |||
| plasmid pMTY13881_IncF | ||||
| 24545 | 73 aa hypothetical protein | |||
| 24550 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco13881ORF24550P |
| 24555 | 103 aa hypothetical protein | |||
| plasmid pMTY13881_IncN | ||||
| 24745 | EAL domain-containing protein | |||
| 24750 | R | YpsR1ORFAP (100% identity) | CCWGG | Eco13881ORF24755P |
| 24755 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.Eco13881ORF24755P |
| 24760 | IS1 family transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16060 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 16065 | R | EcosS9McrCP (100% identity) | Eco13881McrCP | |
| 16070 | R | EcosS3McrBP (100% identity) | Eco13881McrBP | |
| 16075 | glycosyltransferase | |||