Glaesserella parasuis H80 |
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Putative Glaesserella parasuis H80 RM systems
Ref: Huang,A. and Hao,H. unpublished
REBASE ref # 37130
Complete sequence: 2,343,672 bp
GenBank #: CP098768
REBASE acronym: GpaH80
Org_num: 69042
All begin NEE10_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3945 | IS110 family transposase | |||
| 3950 | M | M.Gpa412ORF7440P (99% identity) | M.GpaH80ORF3950P | |
| 3955 | S | S.GpaHF57ORF5595P (62% identity) | S.GpaH80ORF3950P | |
| 3960 | FRG domain-containing protein | |||
| 3965 | R | HpaH465ORF433P (99% identity) | GpaH80ORF3950P | |
| 3970 | histidinol-phosphate transaminase | |||
| 5880 | RNA polymerase sigma factor RpoE | |||
| 5885 | M | M.Gpa412ORF6110P (99% identity) | M.GpaH80ORF5885P | |
| 5890 | S | S.GpaHPS1ORF7480P (98% identity) | S.GpaH80ORF5885P | |
| 5895 | R | Gpa412ORF6110P (99% identity) | GpaH80ORF5885P | |
| 5900 | apolipoprotein N-acyltransferase | |||
| 9585 | 101 aa hypothetical protein | |||
| 9590 | R | Gpa1808ORF10990P (99% identity) | GpaH80ORF9625P | |
| 9595 | 145 aa hypothetical protein | |||
| 9600 | DUF1828 domain-containing protein | |||
| 9605 | DUF1829 domain-containing protein | |||
| 9610 | S | S3.GpaHPS7ORF10025P (97% identity) | S2.GpaH80ORF9625P | |
| 9615 | S | S.Age3216ORF9360P (28% identity) | S1.GpaH80ORF9625P | |
| 9620 | AAA family ATPase | |||
| 9625 | M | M.Gpa1818ORF10805P (95% identity) | M.GpaH80ORF9625P | |
| 9630 | spermidine/putrescine ABC transporter | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 845 | sodium-dependent transporter | |||
| 850 | M | M.HpaSHDamP (100% identity) | GATC | M.GpaH80ORF850P |
| 855 | 3-dehydroquinate synthase | |||
| 2175 | transposase | |||
| ??? | M | M.Gpa1818ORF9420P (100% identity) | M.GpaH80ORF2180P | |
| 2190 | aspartate-semialdehyde dehydrogenase | |||
| 3495 | chromosome partition protein MukE | |||
| 3500 | M | M.Gpa104ORFDP (33% identity) | M.GpaH80ORF3500AP | |
| 3505 | M | M.HpaSHORF261P (70% identity) | M.GpaH80ORF3500BP | |
| 3510 | 199 aa hypothetical protein | |||
| 5410 | AAA family ATPase | |||
| 5415 | M | M.Gpa104ORFBP (99% identity) | M.GpaH80ORF5415P | |
| 5420 | addiction module antidote protein | |||
| 6880 | peptide chain release factor N(5)-glutamine | |||
| ??? | R | HpaSHORF791P (99% identity) | GCGC | GpaH80ORF6895P |
| 6895 | M | M.HpaSH03ORF2165P (100% identity) | GCGC | M.GpaH80ORF6895P |
| 6900 | peptide chain release factor 1 | |||
| 9345 | virulence RhuM family protein | |||
| 9350 | S | S2.GpaHPS1ORF10810P (88% identity) | S3.GpaH80ORF9365P | |
| 9355 | S | S1.Gpa412ORF11740P (56% identity) | S2.GpaH80ORF9365P | |
| 9360 | S | S1.Gpa4ORF1255P (41% identity) | S1.GpaH80ORF9365P | |
| 9365 | RM | HpaSH03ORF10290P (99% identity) | GpaH80ORF9365P | |
| 9370 | ATP-binding protein | |||
| 11155 | valine--tRNA ligase | |||
| 11160 | M | M.HpaSHORF1983P (33% identity) | M.GpaH80ORF11160BP | |
| 11165 | M | M.Gpa104ORFPP (56% identity) | M.GpaH80ORF11160AP | |
| ??? | R | HpaSHORF1983P (100% identity) | AAGCTT | GpaH80ORF11160P |
| 11180 | 56 aa hypothetical protein | |||
| 12215 | 2-hydroxyacid dehydrogenase | |||
| 12220 | R | HpaST41ORF8905P (100% identity) | CGCG | GpaH80ORF12225P |
| 12225 | M | M.HpaST41ORF8905P (100% identity) | CGCG | M.GpaH80ORF12225P |
| 12230 | flavodoxin-dependent | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 215 | beta-ketoacyl-ACP synthase I | |||
| 220 | R | HpaSHORF2158P (99% identity) | GpaH80ORF225P | |
| 225 | M | M.Gpa412ORF2655P (99% identity) | M.GpaH80ORF225P | |
| 230 | DUF4391 domain-containing protein | |||
| 8720 | Fic family protein | |||
| 8725 | R | Gpa4ORF1105P (99% identity) | GpaH80ORF8730P | |
| 8730 | M | M.Gpa1818ORF3335P (59% identity) | M.GpaH80ORF8730BP | |
| 8735 | M | M.Gpa1818ORF3335P (39% identity) | M.GpaH80ORF8730AP | |
| 8740 | ketol-acid reductoisomerase | |||
| 9035 | ATP-binding protein | |||
| 9040 | M | M.HpaSHORF1827P (100% identity) | M.GpaH80ORF9040P | |
| 9045 | R | Hpa33ORF10578P (99% identity) | GpaH80ORF9040P | |
| 9050 | LysR family transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1650 | FAD-dependent oxidoreductase | |||
| 1655 | R | GpaXP11GmrSDP (98% identity) | GpaH80GmrSDP | |
| 1660 | amino acid ABC transporter ATP-binding protein | |||