Escherichia coli O78:H4 |
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Putative Escherichia coli O78:H4 RM systems
Ref: Ha,E.-J. unpublished
REBASE ref # 37057
| Sequence length: | GenBank #: | |
| Chromosome: | 5,021,334 bp | CP126948 |
| Chromosome: | 5,170,367 bp | CP126952 |
| Chromosome: | 4,998,625 bp | CP126955 |
| Chromosome: | 4,885,187 bp | CP126934 |
| plasmid pEND_Eco 12049-2: | 114,229 bp | CP126954 |
| plasmid pEND_Eco 14033-2: | 115,173 bp | CP126950 |
| plasmid pEND_Eco 14033-3: | 108,542 bp | CP126951 |
| plasmid pEND_Eco19057-1: | 110,406 bp | CP126935 |
REBASE acronym: EcoE123
Org_num: 68706
All begin QQA21_, QQA22_, QQA23_, QQA26_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4275 | DNA-binding protein | |||
| 4280 | M | M.Ecos641ORF18845P (100% identity) | M.Eco14033ORF4280P | |
| 4285 | S | S.EcoWH398ORF26840P (100% identity) | S.Eco14033ORF4280P | |
| 4290 | R | EcoW087ORF4400P (100% identity) | Eco14033ORF4280P | |
| 4295 | lactate utilization protein C | |||
| 18810 | UvrD-helicase domain-containing protein | |||
| 18815 | R | Sso8ORF18020P (100% identity) | Eco14033ORF18830P | |
| 18820 | DUF4268 domain-containing protein | |||
| 18825 | S | S.Sso8ORF18020P (100% identity) | S.Eco14033ORF18830P | |
| 18830 | M | M.Sso8ORF18020P (100% identity) | M.Eco14033ORF18830P | |
| 18835 | type I Zorya anti-phage system protein ZorA1 | |||
| 20810 | restriction endonuclease | |||
| 20815 | M | M.Ecos641ORF3050P (100% identity) | GATANNNNNNTAG | M.Eco14033ORF20815P |
| 20820 | S | S.Ecos641ORF3050P (100% identity) | GATANNNNNNTAG | S.Eco14033ORF20815P |
| 20825 | R | Ecos641ORF3050P (100% identity) | GATANNNNNNTAG | Eco14033ORF20815P |
| 20830 | endoribonuclease SymE | |||
| Chromosome | ||||
| 21530 | adenine/cytosine-specific restriction | |||
| 21535 | R | Ssp28760ORF3465P (100% identity) | TGANNNNNNNNTGCT | Eco12049ORF21540P |
| 21540 | M | M.Ssp28760ORF3465P (100% identity) | TGANNNNNNNNTGCT | M.Eco12049ORF21540P |
| 21545 | S | S.EcosBORF22035P (100% identity) | TGANNNNNNNNTGCT | S.Eco12049ORF21540P |
| 21550 | endoribonuclease SymE | |||
| Chromosome | ||||
| 16510 | integrase core domain-containing protein | |||
| 16515 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.EcoE123ORF16515P |
| 16520 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.EcoE123ORF16515P |
| 16525 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | EcoE123ORF16515P |
| 16530 | IS1 family transposase | |||
| Chromosome | ||||
| 12185 | integrase core domain-containing protein | |||
| 12190 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.Eco19057ORF12190P |
| 12195 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.Eco19057ORF12190P |
| 12200 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | Eco19057ORF12190P |
| 12205 | IS1 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1830 | IS21-like element ISEc12 family helper ATPase | |||
| 1835 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoE123ORF1835P |
| 1840 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoE123ORF1835P |
| 1845 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoE123ORF1835P |
| 1850 | McrC family protein | |||
| 2400 | PerC family transcriptional regulator | |||
| 2405 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoE123ORF2405P |
| 2410 | LexA family transcriptional regulator | |||
| 5415 | 67 aa hypothetical protein | |||
| 5420 | M | M.EcoNC22ORF10915P (100% identity) | M.EcoE123ORF5420P | |
| 5425 | 63 aa hypothetical protein | |||
| 7215 | TraR/DksA family transcriptional regulator | |||
| 7220 | M | M.EcoO78ORF7950P (100% identity) | GATC | M.EcoE123ORF7220P |
| 7225 | 273 aa hypothetical protein | |||
| 12780 | drug/metabolite exporter YedA | |||
| 12785 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.EcoE123DcmP |
| 12790 | M | M.EcoVEV11MDcmP (100% identity) | CCWGG | M.EcoE123DcmP |
| 12795 | phosphohydrolase | |||
| 14350 | 89 aa hypothetical protein | |||
| 14355 | M | M.EcoVEV10FORF15720P (100% identity) | M.EcoE123ORF14355P | |
| 14360 | transcriptional regulator | |||
| 20225 | DNA-binding transcriptional regulator Fis | |||
| 20230 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoE123ORF20230P |
| 20235 | DUF2556 family protein | |||
| 20850 | ribulose-phosphate 3-epimerase | |||
| 20855 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoE123DamP |
| 20860 | cell division protein DamX | |||
| 24460 | PerC family transcriptional regulator | |||
| 24465 | M | M.Efe41C20ORF1660P (99% identity) | GATC | M.EcoE123ORF24465P |
| 24470 | RusA family crossover junction | |||
| Chromosome | ||||
| 2170 | cell division protein DamX | |||
| 2175 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco12049DamP |
| 2180 | ribulose-phosphate 3-epimerase | |||
| 2770 | DUF2556 family protein | |||
| 2775 | M | M.EcosS1ORF18905P (100% identity) | ATGCAT | M.Eco12049ORF2775P |
| 2780 | DNA-binding transcriptional regulator Fis | |||
| 9730 | phosphohydrolase | |||
| 9735 | M | M.SdySWHE2DcmP (100% identity) | CCWGG | M.Eco12049DcmP |
| 9740 | V | V.EcosEC7DcmP (100% identity) | CCWGG | V.Eco12049DcmP |
| 9745 | drug/metabolite exporter YedA | |||
| 13795 | 39 aa hypothetical protein | |||
| 13815 | M | M.SsoCS14ORF10750P (100% identity) | A | M.Eco12049ORF13815P |
| 13820 | TrmB family transcriptional regulator | |||
| 16560 | NinE family protein | |||
| 16565 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco12049ORF16565P |
| 16570 | recombination protein NinB | |||
| 19165 | transposase | |||
| 19170 | RM | SflLIN17ORF3140P (100% identity) | Eco12049ORF19170P | |
| 19175 | DEAD/DEAH box helicase | |||
| 21245 | phage lysis protein EssD | |||
| 21250 | M | M.Sso63633ORF22290P (100% identity) | M.Eco12049ORF21250P | |
| 21255 | 67 aa hypothetical protein | |||
| 21280 | LexA family transcriptional regulator | |||
| 21285 | M | M.Sso30ORF925P (100% identity) | GATC | M.Eco12049ORF21285P |
| 21290 | PerC family transcriptional regulator | |||
| Chromosome | ||||
| 1730 | cell division protein DamX | |||
| 1735 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco14033DamP |
| 1740 | ribulose-phosphate 3-epimerase | |||
| 2330 | DUF2556 family protein | |||
| 2335 | M | M.EcoWH398ORF17455P (100% identity) | ATGCAT | M.Eco14033ORF2335P |
| 2340 | DNA-binding transcriptional regulator Fis | |||
| 9805 | phosphohydrolase | |||
| 9810 | M | M.SdySWHE2DcmP (100% identity) | CCWGG | M.Eco14033DcmP |
| 9815 | V | V.EcosEC7DcmP (100% identity) | CCWGG | V.Eco14033DcmP |
| 9820 | drug/metabolite exporter YedA | |||
| 16280 | NinE family protein | |||
| 16285 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco14033ORF16285P |
| 16290 | recombination protein NinB | |||
| Chromosome | ||||
| 390 | PerC family transcriptional regulator | |||
| 395 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco19057ORF395P |
| 400 | LexA family transcriptional regulator | |||
| 430 | 67 aa hypothetical protein | |||
| 435 | M | M.EcoNC22ORF10915P (100% identity) | M.Eco19057ORF435P | |
| 440 | 63 aa hypothetical protein | |||
| 2230 | TraR/DksA family transcriptional regulator | |||
| 2235 | M | M.EcoO78ORF7950P (100% identity) | GATC | M.Eco19057ORF2235P |
| 2240 | 273 aa hypothetical protein | |||
| 8365 | drug/metabolite exporter YedA | |||
| 8370 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.Eco19057DcmP |
| 8375 | M | M.EcoVEV11MDcmP (100% identity) | CCWGG | M.Eco19057DcmP |
| 8380 | phosphohydrolase | |||
| 10010 | 89 aa hypothetical protein | |||
| 10015 | M | M.EcoVEV10FORF15720P (100% identity) | M.Eco19057ORF10015P | |
| 10020 | transcriptional regulator | |||
| 13950 | integrase | |||
| 13955 | R | SflFF24DptFP (100% identity) | Eco19057DptFP | |
| 13960 | DNA phosphorothioation-dependent restriction | |||
| 13955 | DNA phosphorothioation-dependent restriction | |||
| 13960 | R | SflFF24DptGP (100% identity) | Eco19057DptGP | |
| 13965 | DNA phosphorothioation-dependent restriction | |||
| 13960 | DNA phosphorothioation-dependent restriction | |||
| 13965 | R | EcosEC5DptHP (100% identity) | Eco19057DptHP | |
| 13970 | accessory gene regulator B family protein | |||
| 13980 | DGQHR domain-containing protein | |||
| 13985 | M | M.SflFF24DndEP (100% identity) | M.Eco19057DndEP | |
| 13990 | DNA sulfur modification protein DndD | |||
| 13985 | DNA sulfur modification protein DndE | |||
| 13990 | M | M.SflFF24DndDP (100% identity) | M.Eco19057DndDP | |
| 13995 | DNA phosphorothioation system sulfurtransferase | |||
| 13990 | DNA sulfur modification protein DndD | |||
| 13995 | M | M.SflFF24DndCP (100% identity) | M.Eco19057DndCP | |
| 14000 | DNA sulfur modification protein DndB | |||
| 13995 | DNA phosphorothioation system sulfurtransferase | |||
| 14000 | M | M.SflFF24DndBP (100% identity) | M.Eco19057DndBP | |
| 14005 | osmoprotectant transport activator ProQ | |||
| 15655 | DNA-binding transcriptional regulator Fis | |||
| 15660 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco19057ORF15660P |
| 15665 | DUF2556 family protein | |||
| 16280 | ribulose-phosphate 3-epimerase | |||
| 16285 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco19057DamP |
| 16290 | cell division protein DamX | |||
| 21110 | IS21-like element ISEc12 family helper ATPase | |||
| 21115 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Eco19057ORF21115P |
| 21120 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Eco19057ORF21115P |
| 21125 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco19057ORF21115P |
| 21130 | McrC family protein | |||
| plasmid pEND_Eco 12049-2 | ||||
| 26185 | 103 aa hypothetical protein | |||
| 26190 | M | M.StyR64ORFAP (100% identity) | M.Eco12049ORF26190P | |
| 26195 | 73 aa hypothetical protein | |||
| plasmid pEND_Eco 14033-2 | ||||
| 25465 | 101 aa hypothetical protein | |||
| 25470 | M | M.Sso11ORF329P (100% identity) | M.Eco14033ORF25470P | |
| 25475 | 73 aa hypothetical protein | |||
| plasmid pEND_Eco19057-1 | ||||
| 24555 | 103 aa hypothetical protein | |||
| 24560 | M | M.Sen72779ORF22555P (100% identity) | M.Eco19057ORF24560P | |
| 24565 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20805 | BrnT family toxin | |||
| 20810 | R | EfeE4C07MrrP (100% identity) | Eco14033MrrP | |
| 20815 | class I SAM-dependent DNA methyltransferase | |||
| Chromosome | ||||
| 21525 | GTPase | |||
| 21530 | R | Ssp28760MrrP (100% identity) | Eco12049MrrP | |
| 21535 | type I restriction-modification system | |||
| Chromosome | ||||
| 1845 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 1850 | R | EcosS9McrCP (99% identity) | EcoE123McrCP | |
| 1855 | R | EcosS3McrBP (100% identity) | EcoE123McrBP | |
| 1860 | glycosyltransferase | |||
| 14275 | IS3-like element IS2 family transposase | |||
| 14280 | R | Ecochi7122GmrSDP (100% identity) | EcoE123GmrSDP | |
| 14285 | recombinase family protein | |||
| Chromosome | ||||
| 9935 | IS3-like element IS2 family transposase | |||
| 9940 | R | Ecochi7122GmrSDP (100% identity) | Eco19057GmrSDP | |
| 9945 | recombinase family protein | |||
| 21125 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 21130 | R | EcosS9McrCP (100% identity) | Eco19057McrCP | |
| 21135 | R | EcosS3McrBP (100% identity) | Eco19057McrBP | |
| 21140 | glycosyltransferase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pEND_Eco 14033-3 | ||||
| 26240 | 76 aa hypothetical protein | |||
| 26245 | M | M.Sso524ORF460P (100% identity) | GATC | M.Eco14033ORF26245P |
| 26250 | 269 aa hypothetical protein | |||