Helicobacter pylori BS31 |
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Putative Helicobacter pylori BS31 RM systems
Ref: Sripa,B. and Edwards,S.W. unpublished
REBASE ref # 37016
Complete sequence: 1,662,494 bp
GenBank #: CP122946
REBASE acronym: HpyBS31
Org_num: 68429
All begin QAP07_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 375 | LPP20 family lipoprotein | |||
| 380 | S | S.HpyISR8XII (92% identity) | S.HpyBS31ORF385P | |
| 385 | M | M.HpyK119ORF7290P (95% identity) | M.HpyBS31ORF385P | |
| 390 | R | Hpy3sORF380P (95% identity) | HpyBS31ORF385P | |
| 395 | SprT family zinc-dependent metalloprotease | |||
| 2945 | RNA degradosome polyphosphate kinase | |||
| 2955 | S | S.HpySWT08ORF2125P (98% identity) | GACNNNNNTG | S.HpyBS31ORF2960P |
| 2960 | M | M.HpyPR04IV (95% identity) | GACNNNNNTG | M.HpyBS31ORF2960P |
| 2965 | R | Hpy3192ORF3080P (66% identity) | GACNNNNNTG | HpyBS31ORF2960P |
| 2970 | 44 aa hypothetical protein | |||
| 4900 | hydroxyethylthiazole kinase | |||
| 4905 | R | HpyCA17ORF4270P (94% identity) | CCANNNNNNCTT | HpyBS31ORF4915P |
| 4910 | S | S.HpyGE2ORF3165P (96% identity) | CCANNNNNNCTT | S.HpyBS31ORF4915P |
| 4915 | M | M.HpyV005IV (94% identity) | CCANNNNNNCTT | M.HpyBS31ORF4915P |
| 4920 | phosphatase PAP2 family protein | |||
| 7815 | nickel-binding protein HpnL | |||
| 7820 | S | S.HpyNP11ORF7555P (86% identity) | S.HpyBS31ORF7820P | |
| 7825 | formyltetrahydrofolate deformylase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 672 aa hypothetical protein | |||
| 60 | RM | HpyJP26ORFOP (89% identity) | HpyBS31ORF60P | |
| 65 | 184 aa hypothetical protein | |||
| 280 | ComF family protein | |||
| 285 | RM | HpySP05ORF800P (98% identity) | CYANNNNNNNTGA | HpyBS31ORF285P |
| 290 | S | S.HpyJA104VI (95% identity) | CYANNNNNNNTRG | S.HpyBS31ORF285P |
| 295 | DNA polymerase I | |||
| 995 | agmatine/peptidylarginine deiminase | |||
| 1000 | M | M2.Hpyfe12ORF7025P (97% identity) | CCTC | M1.HpyBS31ORF1000P |
| 1005 | M | M1.Hpyfe123ORF6995P (97% identity) | CCTC | M2.HpyBS31ORF1000P |
| 1010 | R | HpyID10ORF250P (93% identity) | CCTC | HpyBS31ORF1000P |
| 1015 | site-specific DNA-methyltransferase | |||
| 1010 | HNH endonuclease | |||
| 1015 | M | M.HpyKG9X (100% identity) | GTSAC | M.HpyBS31ORF1015P |
| 1020 | R | HpyR10XIP (100% identity) | GTSAC | HpyBS31ORF1015P |
| 1025 | DNA cytosine methyltransferase | |||
| 1240 | 314 aa hypothetical protein | |||
| 1245 | M | M.HpyC102VI (98% identity) | GATC | M.HpyBS31ORF1245P |
| 1250 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 2050 | exodeoxyribonuclease VII large subunit | |||
| 2055 | M | M.HpyL029XI (99% identity) | TCGA | M.HpyBS31ORF2055P |
| 2060 | 204 aa hypothetical protein | |||
| 2320 | polysaccharide deacetylase | |||
| 2325 | R | HpyV004VP (100% identity) | CTNAG | HpyBS31ORF2330P |
| 2330 | M | M.HpyV004V (100% identity) | CTNAG | M.HpyBS31ORF2330P |
| 2335 | 128 aa hypothetical protein | |||
| 3045 | Hop family outer membrane protein HopJ/HopK | |||
| 3050 | M | M.HpyBG8II (98% identity) | ATTAAT | M.HpyBS31ORF3050P |
| 3055 | glycosyltransferase family 9 protein | |||
| 3060 | translational GTPase TypA | |||
| 3065 | M | M.HpyT001ORF2260P (50% identity) | M.HpyBS31ORF3065P | |
| 3070 | catalase | |||
| 3155 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3160 | M | M.HpyTW20III (100% identity) | GTAC | M.HpyBS31ORF3160P |
| 3165 | R | HpyCHN2XIP (98% identity) | GTAC | HpyBS31ORF3160P |
| 3170 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4030 | (Fe-S)-binding protein | |||
| 4035 | RM | HpyC028ORF4520P (85% identity) | HpyBS31ORF4035P | |
| 4040 | outer membrane protein | |||
| 5185 | flagellar hook protein FlgE | |||
| 5190 | R | HpyFD719ORF7505P (95% identity) | GTNNAC | HpyBS31ORF5195P |
| 5195 | M | M.HpyV005X (97% identity) | GTNNAC | M.HpyBS31ORF5195P |
| 5200 | ATP-dependent helicase | |||
| 6085 | FkbM family methyltransferase | |||
| 6090 | M | M.HpyL018XIII (100% identity) | TCNNGA | M.HpyBS31ORF6090P |
| 6095 | R | HpyNP13XIIP (100% identity) | TCNNGA | HpyBS31ORF6090P |
| 6100 | Laminin subunit alpha-2 precursor | |||
| 6290 | 144 aa hypothetical protein | |||
| 6295 | M | M.HpyOki112ORF5935P (96% identity) | GCGC | M.HpyBS31ORF6295P |
| 6300 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6585 | purine-nucleoside phosphorylase | |||
| 6590 | M | M.HpySW06II (100% identity) | TCNGA | M.HpyBS31ORF6590P |
| 6595 | R | Hpyfe93ORF1580P (100% identity) | TCNGA | HpyBS31ORF6590P |
| 6600 | purine-nucleoside phosphorylase | |||
| 6770 | HAD family hydrolase | |||
| 6775 | M | M.HpyGE9I (98% identity) | CATG | M.HpyBS31ORF6775P |
| 6780 | R | HpySP308IP (96% identity) | CATG | HpyBS31ORF6775P |
| 6785 | serine O-acetyltransferase | |||
| 7505 | DNA methyltransferase | |||
| 7510 | R | Hpyfe120ORF7020P (93% identity) | GANTC | HpyBS31ORF7515P |
| 7515 | M | M.Hpyfe10ORF6990P (98% identity) | GANTC | M.HpyBS31ORF7515P |
| 7520 | N-6 DNA methylase | |||
| 7515 | DNA methyltransferase | |||
| 7520 | RM | HpySP07ORF6570P (85% identity) | HpyBS31ORF7520P | |
| 7525 | carboxylating nicotinate-nucleotide | |||
| 7715 | glycosyltransferase family 8 protein | |||
| 7720 | M | M.HpySP502VII (98% identity) | GAATTC | M.HpyBS31ORF7720P |
| ??? | R | HpyT001ORF6855P (95% identity) | GAATTC | HpyBS31ORF7720P |
| 7730 | UDP-N-acetylmuramate dehydrogenase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpySH014ORF7240P (94% identity) | M.HpyBS31ORF40P | |
| 50 | R | HpyID5ORF7275P (95% identity) | HpyBS31ORF40P | |
| 55 | 672 aa hypothetical protein | |||
| 7575 | copper response regulator transcription factor | |||
| ??? | M | M.HpyKH39ORFXP (92% identity) | M.HpyBS31ORF7580P | |
| 7590 | R | HpyLI35ORF385P (88% identity) | HpyBS31ORF7580P | |
| 7595 | rod shape-determining protein MreC | |||
| 7650 | DNA/RNA non-specific endonuclease | |||
| 7655 | M | M.HpyT004ORF6930P (95% identity) | M.HpyBS31ORF7655P | |
| 7660 | R | HpyID1ORF6970P (92% identity) | HpyBS31ORF7655P | |
| 7665 | biotin synthase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3350 | type I glutamate--ammonia ligase | |||
| 3355 | R | Hpyfe62GmrSDP (85% identity) | HpyBS31GmrSDP | |
| 3360 | 50S ribosomal protein L9 | |||
| 3835 | tetratricopeptide repeat protein | |||
| 3840 | R | HpyCA8GmrSD2P (92% identity) | HpyBS31GmrSD2P | |
| 3845 | NAD(P)H-dependent oxidoreductase | |||