Salmonella enterica subsp. enterica serovar Typhi 1521-2017_CO_04 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Typhi 1521-2017_CO_04 RM systems
Ref: Lagos,R.M. et al. unpublished
REBASE ref # 36987
Complete sequence: 4,833,474 bp
GenBank #: CP120396
REBASE acronym: SenCO04
Org_num: 68260
All begin PVA80_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 18875 | restriction endonuclease | |||
| 18880 | R | StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | SenCO04ORF18885P |
| 18885 | M | M.StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | M.SenCO04ORF18885P |
| 18890 | S | S.StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | S.SenCO04ORF18885P |
| 18895 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3295 | 232 aa hypothetical protein | |||
| 3300 | M | M.Sen1521ORF3310P (100% identity) | M.SenCO04ORF3300P | |
| 3305 | 47 aa hypothetical protein | |||
| 8835 | DUF4060 family protein | |||
| 8840 | M | M.StyTORF1926P (95% identity) | M.SenCO04ORF8840P | |
| 8845 | DGQHR domain-containing protein | |||
| 8900 | ead/Ea22-like family protein | |||
| 8905 | M | M.StyTORF1914P (100% identity) | ATGCAT | M.SenCO04ORF8905P |
| 8910 | DUF550 domain-containing protein | |||
| 14130 | drug/metabolite exporter YedA | |||
| 14135 | V | V.StyTDcmP (100% identity) | CCWGG | V.SenCO04DcmP |
| 14140 | M | M.StyTDcmP (100% identity) | CCWGG | M.SenCO04DcmP |
| 14145 | phosphohydrolase | |||
| 19010 | YebC/PmpR family DNA-binding transcriptional | |||
| 19015 | R | Senst12ORF9665P (100% identity) | SenCO04ORF19015P | |
| 19020 | 64 aa hypothetical protein | |||
| 20095 | 3-5 exonuclease | |||
| 20100 | M | M.StyTORF4329P (100% identity) | GATC | M.SenCO04ORF20100P |
| 20105 | replication endonuclease | |||
| 21995 | DNA-binding transcriptional regulator Fis | |||
| 22000 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenCO04ORF22000P |
| 22005 | DUF2556 family protein | |||
| 23265 | TraR/DksA family transcriptional regulator | |||
| 23270 | M | M.StyTORF3409P (100% identity) | GATC | M.SenCO04ORF23270P |
| 23275 | replication endonuclease | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5905 | MFS transporter | |||
| 5910 | M | M.SenSARB17ORF14879P (100% identity) | CAGAG | M.SenCO04ORF5910P |
| 5915 | R | StyTORF2507P (99% identity) | CAGAG | SenCO04ORF5910P |
| 5920 | small effector SsaA | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 18870 | BrnT family toxin | |||
| 18875 | R | StyTMrrP (100% identity) | SenCO04MrrP | |
| 18880 | type I restriction-modification system | |||