Salmonella enterica subsp. enterica HL21 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica HL21 RM systems
Ref: Cao,G. unpublished
REBASE ref # 28456
| Sequence length: | GenBank #: | |
| Chromosome: | 4,823,717 bp | CP126325 |
| plasmid pHL21A: | 90,249 bp | CP126326 |
| plasmid pHL21B: | 85,700 bp | CP126327 |
REBASE acronym: SenHL21
Org_num: 68241
All begin QN088_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19705 | restriction endonuclease | |||
| 19710 | R | SenSPBIP (100% identity) | CRTANNNNNNNNTCGC | SenHL21ORF19715P |
| 19715 | M | M.SenSPBI (100% identity) | CRTANNNNNNNNTCGC | M.SenHL21ORF19715P |
| 19720 | S | S.SenSPBI (100% identity) | CRTANNNNNNNNTCGC | S.SenHL21ORF19715P |
| 19725 | endoribonuclease SymE | |||
| 19860 | N-6 DNA methylase | |||
| 19865 | R | SenC6017ORF4665P (100% identity) | GCCNNNNNCATC | SenHL21ORF19875P |
| 19870 | S | S.SenAboIII (100% identity) | GCCNNNNNCATC | S.SenHL21ORF19875P |
| 19875 | M | M2.SenC6017ORF4665P (99% identity) | GCCNNNNNCATC | M2.SenHL21ORF19875P |
| 19880 | M | M1.SenSA5ORF17266P (100% identity) | GCCNNNNNCATC | M1.SenHL21ORF19875P |
| 19885 | toll/interleukin-1 receptor domain-containing | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2260 | DUF2556 family protein | |||
| 2265 | M | M.Sensp14178ORF2230P (100% identity) | ATGCAT | M.SenHL21ORF2265P |
| 2270 | DNA-binding transcriptional regulator Fis | |||
| 9115 | 157 aa hypothetical protein | |||
| 9120 | M | M.SenAD19ORF14635P (100% identity) | M.SenHL21ORF9120P | |
| 9125 | RusA family crossover junction | |||
| 9370 | phosphohydrolase | |||
| 9375 | M | M.SspZ69DcmP (96% identity) | CCWGG | M.SenHL21DcmP |
| 9380 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.SenHL21DcmP |
| 9385 | drug/metabolite exporter YedA | |||
| 19845 | YebC/PmpR family DNA-binding transcriptional | |||
| 19850 | R | SenAboORF8730P (99% identity) | SenHL21ORF19850P | |
| 19855 | AAA family ATPase | |||
| 22220 | replication endonuclease | |||
| 22225 | M | M.Sen9872ORF4200P (99% identity) | M.SenHL21ORF22225P | |
| 22230 | 129 aa hypothetical protein | |||
| plasmid pHL21A | ||||
| 23465 | RepB family plasmid replication initiator | |||
| 23470 | M | M.Sen3045ORFAP (100% identity) | M.SenHL21ORF23470P | |
| 23475 | DUF1380 family protein | |||
| plasmid pHL21B | ||||
| 24120 | 103 aa hypothetical protein | |||
| 24125 | M | M.Sen12705ORF4788P (99% identity) | M.SenHL21ORF24125P | |
| 24130 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17555 | small effector SsaA | |||
| 17560 | R | Sen9597ORF17720P (100% identity) | CAGAG | SenHL21ORF17565P |
| 17565 | M | M.StyTORF2507P (100% identity) | CAGAG | M.SenHL21ORF17565P |
| 17570 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19700 | BrnT family toxin | |||
| 19705 | R | SenSPBMrrP (100% identity) | SenHL21MrrP | |
| 19710 | type I restriction-modification system | |||
| 19890 | 102 aa hypothetical protein | |||
| 19895 | R | SenAboMrr2P (99% identity) | SenHL21Mrr2P | |
| 19900 | AAA domain-containing protein | |||