Photobacterium damselae Pdd2008 |
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Putative Photobacterium damselae Pdd2008 RM systems
Ref: Zhang,Z. unpublished
REBASE ref # 26470
| Sequence length: | GenBank #: | |
| chromosome 1: | 3,197,991 bp | CP076733 |
| chromosome 2: | 1,206,524 bp | CP076734 |
REBASE acronym: Pda2008
Org_num: 68142
All begin KQY33_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 2665 | tyrosine-type recombinase/integrase | |||
| 2670 | M | M.Pda1411ORF19350P (97% identity) | M.Pda2008ORF2670P | |
| 2675 | S | S.Tau9187ORF1220P (49% identity) | S.Pda2008ORF2670P | |
| 2680 | PD-(D/E)XK nuclease family protein | |||
| 2685 | R | PanA24ORF11530P (95% identity) | Pda2008ORF2670P | |
| 2690 | ParB/RepB/Spo0J family partition protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1090 | AAA family ATPase | |||
| 1095 | M | M.PdaXP11DamP (100% identity) | GATC | M.Pda2008DamP |
| 1100 | DUF2970 domain-containing protein | |||
| 10760 | ATP-binding protein | |||
| 10765 | M | M.Vph601ORFDP (90% identity) | M.Pda2008ORF10765P | |
| 10770 | ParB/Srx family N-terminal domain-containing | |||
| chromosome 2 | ||||
| 15530 | DUF262 domain-containing protein | |||
| 15535 | M | M.Pda9633ORF16655P (98% identity) | M.Pda2008ORF15535P | |
| 15540 | R | R1.Pda906ORF20660P (77% identity) | Pda2008ORF15535P | |
| 15545 | LysR family transcriptional regulator | |||
| 17845 | BREX system P-loop protein BrxC | |||
| 17850 | RM | ValZZV2ORF21810P (93% identity) | Pda2008ORF17850P | |
| 17855 | AAA family ATPase | |||
| 19090 | alpha/beta hydrolase | |||
| 19095 | M | M.PdaNHLM2ORF260P (100% identity) | M.Pda2008ORF19095P | |
| 19100 | HD domain-containing protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 645 | nucleotidyl transferase AbiEii/AbiGii toxin | |||
| 650 | M | M.Hsp13718ORF5650P (70% identity) | M.Pda2008ORF650P | |
| 655 | R | SspIB574ORF4035P (99% identity) | Pda2008ORF650P | |
| 660 | XRE family transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 2 | ||||
| 17895 | tyrosine-type recombinase/integrase | |||
| ??? | R | Pda210McrBP (96% identity) | Pda2008McrBP | |
| 17905 | R | PdaWMDP3McrCP (96% identity) | Pda2008McrCP | |
| 17910 | UvrD-helicase domain-containing protein | |||