Salmonella enterica subsp. enterica serovar Kottbus DSK01 |
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Putative Salmonella enterica subsp. enterica serovar Kottbus DSK01 RM systems
Ref: Zhu,Y.L. and Gao,J. unpublished
REBASE ref # 36986
| Sequence length: | GenBank #: | |
| Chromosome: | 4,894,693 bp | CP126138 |
| plasmid unnamed1: | 93,855 bp | CP126139 |
REBASE acronym: SenDSK01
Org_num: 68250
All begin QNM33_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20140 | restriction endonuclease | |||
| 20145 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenDSK01ORF20150P |
| 20150 | M | M.StyUK1II (100% identity) | GAGNNNNNNRTAYG | M.SenDSK01ORF20150P |
| 20155 | S | S.SspA39ORFBP (100% identity) | GAGNNNNNNRTAYG | S.SenDSK01ORF20150P |
| 20160 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1810 | cell division protein DamX | |||
| 1815 | M | M.StyTDamP (100% identity) | GATC | M.SenDSK01DamP |
| 1820 | ribulose-phosphate 3-epimerase | |||
| 2305 | DUF2556 family protein | |||
| 2310 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenDSK01ORF2310P |
| 2315 | DNA-binding transcriptional regulator Fis | |||
| 5640 | TraR/DksA family transcriptional regulator | |||
| 5645 | M | M.SspA39ORFGP (100% identity) | GATC | M.SenDSK01ORF5645P |
| 5650 | replication endonuclease | |||
| 9515 | PerC family transcriptional regulator | |||
| 9520 | M | M.StyUK1V (100% identity) | GATC | M.SenDSK01ORF9520P |
| 9525 | RusA family crossover junction | |||
| 9755 | phosphohydrolase | |||
| 9760 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenDSK01DcmP |
| 9765 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.SenDSK01DcmP |
| 9770 | drug/metabolite exporter YedA | |||
| 20300 | BREX system P-loop protein BrxC | |||
| 20305 | RM | StyUK1IV (100% identity) | GATCAG | SenDSK01ORF20305P |
| 20310 | AAA family ATPase | |||
| plasmid unnamed1 | ||||
| 24370 | 93 aa hypothetical protein | |||
| 24375 | M | M.StyUK1ORFAP (100% identity) | M.SenDSK01ORF24375P | |
| 24380 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17955 | small effector SsaA | |||
| 17960 | R | StyUK1IP (99% identity) | CAGAG | SenDSK01ORF17965P |
| 17965 | M | M.StyUK1I (100% identity) | CAGAG | M.SenDSK01ORF17965P |
| 17970 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20135 | BrnT family toxin | |||
| 20140 | R | StyUK1MrrP (100% identity) | SenDSK01MrrP | |
| 20145 | type I restriction-modification system | |||
| 20325 | protease Lon-related BREX system protein BrxL | |||
| 20330 | R | StyLTMrrP (100% identity) | SenDSK01Mrr2P | |
| 20335 | phospholipase D-like domain-containing protein | |||