Escherichia coli ETEC6334 |
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Putative Escherichia coli ETEC6334 RM systems
Ref: Vereecke,N. et al. Front Microbiol 14, 1139312 (2023)
REBASE ref # 36777
| Sequence length: | GenBank #: | |
| Chromosome: | 5,142,647 bp | CP122604 |
| plasmid unnamed2: | 115,204 bp | CP122606 |
REBASE acronym: Eco6334
Org_num: 67383
All begin QDW51_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5680 | IS1 family transposase | |||
| 5685 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | Eco6334ORF5695P |
| 5690 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.Eco6334ORF5695P |
| 5695 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.Eco6334ORF5695P |
| 5700 | integrase core domain-containing protein | |||
| 15095 | GTPase family protein | |||
| 15100 | M | M.EcoW1316ORF930P (100% identity) | M.Eco6334ORF15100P | |
| 15105 | S | S.EcoW1316ORF930P (100% identity) | S.Eco6334ORF15100P | |
| 15110 | R | EcoW1316ORF930P (100% identity) | Eco6334ORF15100P | |
| 15115 | IS5-like element ISKpn26 family transposase | |||
| 19385 | type IV toxin-antitoxin system AbiEi family | |||
| 19390 | R | EcoP1525ORF5305P (100% identity) | CAACNNNNGTT | Eco6334ORF19395P |
| 19395 | M | M.EcoW1316ORF21120P (100% identity) | CAACNNNNGTT | M.Eco6334ORF19395P |
| 19400 | S | S.EcoW1316ORF21120P (100% identity) | CAACNNNNGTT | S.Eco6334ORF19395P |
| 19405 | ash family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1820 | cell division protein DamX | |||
| 1825 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco6334DamP |
| 1830 | ribulose-phosphate 3-epimerase | |||
| 2350 | DUF2556 family protein | |||
| 2355 | M | M.EcoW1316ORF13330P (100% identity) | ATGCAT | M.Eco6334ORF2355P |
| 2360 | DNA-binding transcriptional regulator Fis | |||
| 6065 | Com family DNA-binding transcriptional | |||
| 6070 | M | M.EcoEC180ORF6030P (100% identity) | M.Eco6334ORF6070P | |
| 6075 | ribosome-associated translation inhibitor RaiA | |||
| 6565 | DUF1382 family protein | |||
| 6570 | M | M.SspPIBORF6330P (100% identity) | GATC | M.Eco6334ORF6570P |
| 6575 | PerC family transcriptional regulator | |||
| 9780 | phosphohydrolase | |||
| 9785 | M | M.EcoW1316DcmP (100% identity) | CCWGG | M.Eco6334DcmP |
| 9790 | V | V.EcoW1316DcmP (100% identity) | V.Eco6334DcmP | |
| 9795 | drug/metabolite exporter YedA | |||
| 11925 | DUF977 family protein | |||
| 11930 | M | M.SsoSE61ORF20220P (100% identity) | M.Eco6334ORF11930P | |
| 11935 | 139 aa hypothetical protein | |||
| 13795 | Shiga toxin Stx2 subunit A | |||
| 13815 | M | M.EcoW1316ORF2195P (100% identity) | M.Eco6334ORF13815P | |
| 13820 | TrmB family transcriptional regulator | |||
| 15510 | 92 aa hypothetical protein | |||
| 15515 | M | M.EcoW26ORF35400P (100% identity) | M.Eco6334ORF15515P | |
| 15520 | TrmB family transcriptional regulator | |||
| 22515 | 62 aa hypothetical protein | |||
| 22520 | M | M.EcoC1747ORF4185P (100% identity) | CTGAAG | M.Eco6334ORF22520P |
| 22525 | RM | Efe41C23ORF15565P (100% identity) | CTGAAG | Eco6334ORF22520P |
| 22530 | type I restriction-modification system subunit M | |||
| plasmid unnamed2 | ||||
| 26070 | 103 aa hypothetical protein | |||
| 26075 | M | M.Sso866ORF27155P (100% identity) | M.Eco6334ORF26075P | |
| 26080 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22530 | type I restriction-modification system subunit M | |||
| 22535 | R | EcoC9969McrCP (100% identity) | Eco6334McrCP | |
| 22540 | R | EcoC1747McrB2P (100% identity) | Eco6334McrBP | |
| 22545 | IS3 family transposase | |||