Escherichia coli ETEC1748 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli ETEC1748 RM systems
Ref: Vereecke,N. et al. Front Microbiol 14, 1139312 (2023)
REBASE ref # 36777
| Sequence length: | GenBank #: | |
| Chromosome: | 5,096,790 bp | CP122719 |
| plasmid unnamed1: | 47,961 bp | CP122720 |
REBASE acronym: EcoC1748
Org_num: 67753
All begin QDW92_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5890 | IS1 family transposase | |||
| 5895 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | EcoC1748ORF5905P |
| 5900 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.EcoC1748ORF5905P |
| 5905 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.EcoC1748ORF5905P |
| 5910 | integrase core domain-containing protein | |||
| 15400 | GTPase family protein | |||
| 15405 | M | M.EcoW1316ORF930P (100% identity) | M.EcoC1748ORF15405P | |
| 15410 | S | S.EcoW1316ORF930P (100% identity) | S.EcoC1748ORF15405P | |
| 15415 | R | EcoW1316ORF930P (100% identity) | EcoC1748ORF15405P | |
| 15420 | IS5-like element ISKpn26 family transposase | |||
| 19555 | type IV toxin-antitoxin system AbiEi family | |||
| 19560 | R | EcoP1525ORF5305P (100% identity) | CAACNNNNGTT | EcoC1748ORF19565P |
| 19565 | M | M.EcoW1316ORF21120P (100% identity) | CAACNNNNGTT | M.EcoC1748ORF19565P |
| 19570 | S | S.EcoW1316ORF21120P (100% identity) | CAACNNNNGTT | S.EcoC1748ORF19565P |
| 19575 | ash family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1770 | cell division protein DamX | |||
| 1775 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC1748Dam2P |
| 1780 | ribulose-phosphate 3-epimerase | |||
| 2300 | DUF2556 family protein | |||
| 2305 | M | M.EcoW1316ORF13330P (100% identity) | ATGCAT | M.EcoC1748ORF2305P |
| 2310 | DNA-binding transcriptional regulator Fis | |||
| 6555 | DUF1382 family protein | |||
| 6560 | M | M.SspPIBORF6330P (100% identity) | GATC | M.EcoC1748ORF6560P |
| 6565 | PerC family transcriptional regulator | |||
| 10060 | phosphohydrolase | |||
| 10065 | M | M.EcoW1316DcmP (100% identity) | CCWGG | M.EcoC1748Dcm2P |
| 10070 | V | V.EcoW1316DcmP (100% identity) | V.EcoC1748Dcm2P | |
| 10075 | drug/metabolite exporter YedA | |||
| 12190 | DUF977 family protein | |||
| 12195 | M | M.EcoC4071ORF12110P (100% identity) | M.EcoC1748ORF12195P | |
| 12200 | 139 aa hypothetical protein | |||
| 14120 | Shiga toxin Stx2e subunit A | |||
| 14140 | M | M.EcoW1316ORF2195P (100% identity) | M.EcoC1748ORF14140P | |
| 14145 | TrmB family transcriptional regulator | |||
| 15820 | 92 aa hypothetical protein | |||
| 15825 | M | M.EcoW26ORF35400P (100% identity) | M.EcoC1748ORF15825P | |
| 15830 | TrmB family transcriptional regulator | |||
| plasmid unnamed1 | ||||
| 25310 | 101 aa hypothetical protein | |||
| 25315 | M | M.SflFF87ORF23240P (100% identity) | M.EcoC1748ORF25315P | |
| 25320 | 73 aa hypothetical protein | |||