Escherichia coli ETEC1706 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli ETEC1706 RM systems
Ref: Vereecke,N. et al. Front Microbiol 14, 1139312 (2023)
REBASE ref # 36777
| Sequence length: | GenBank #: | |
| Chromosome: | 4,882,167 bp | CP122904 |
| plasmid unnamed1: | 72,734 bp | CP122905 |
| plasmid unnamed10: | 130,537 bp | CP122914 |
| plasmid unnamed12: | 266,050 bp | CP122916 |
| plasmid unnamed14: | 106,218 bp | CP122918 |
| plasmid unnamed15: | 70,597 bp | CP122919 |
| plasmid unnamed18: | 97,296 bp | CP122922 |
| plasmid unnamed5: | 93,594 bp | CP122909 |
| plasmid unnamed6: | 90,922 bp | CP122910 |
REBASE acronym: Eco1706
Org_num: 67334
All begin QDX08_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14470 | 58 aa hypothetical protein | |||
| 14475 | M | M.Ecos1613ORF5225P (100% identity) | CCAYNNNNNGTTY | M.Eco1706ORF14475P |
| 14480 | S | S.Ecos1613ORF5225P (100% identity) | CCAYNNNNNGTTY | S.Eco1706ORF14475P |
| 14485 | toxin-antitoxin system toxin DNA ADP-ribosyl | |||
| 14490 | toxin-antitoxin system antitoxin DNA ADP-ribosyl | |||
| 14495 | R | Ecos1613ORF5225P (99% identity) | CCAYNNNNNGTTY | Eco1706ORF14475P |
| 14500 | SprT family zinc-dependent metalloprotease | |||
| 20855 | adenine/cytosine-specific restriction | |||
| 20860 | R | Ecos15955ORF12100P (100% identity) | Eco1706ORF20865P | |
| 20865 | M | M.Ecos15955ORF12100P (100% identity) | M.Eco1706ORF20865P | |
| 20870 | S | S.Ecos15955ORF12100P (43% identity) | S1.Eco1706ORF20865P | |
| 20875 | S | S2.EcoC4072ORF8715P (100% identity) | S2.Eco1706ORF20865P | |
| 20880 | 23 aa hypothetical protein | |||
| plasmid unnamed10 | ||||
| 26305 | type II toxin-antitoxin system Phd/YefM family | |||
| 26310 | M | M.SenceORFJP (99% identity) | CAAYNNNNNNCTGG | M.Eco1706ORF26310P |
| 26315 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S1.Eco1706ORF26310P |
| 26320 | R | SenceORFJP (100% identity) | CAAYNNNNNNCTGG | Eco1706ORF26310P |
| 26325 | IS1-like element IS1A family transposase | |||
| plasmid unnamed5 | ||||
| 24745 | DNA polymerase III subunit theta | |||
| 24750 | M | M.EcoD228ORF14990P (99% identity) | GAANNNNNNNTAAA | M.Eco1706ORF24750P |
| 24755 | S | S.Eco333ORF20955P (99% identity) | GAANNNNNNNTAAA | S.Eco1706ORF24750P |
| 24760 | R | Eco0135ORF23335P (99% identity) | GAANNNNNNNTAAA | Eco1706ORF24750P |
| 24765 | 3-phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1705 | cell division protein DamX | |||
| 1710 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco1706DamP |
| 1715 | ribulose-phosphate 3-epimerase | |||
| 2345 | DUF2556 family protein | |||
| 2350 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco1706ORF2350P |
| 2355 | DNA-binding transcriptional regulator Fis | |||
| 9545 | phosphohydrolase | |||
| 9550 | M | M.EcoP136DcmP (100% identity) | CCWGG | M.Eco1706DcmP |
| 9555 | V | V.EcoP136DcmP (100% identity) | V.Eco1706DcmP | |
| 9560 | drug/metabolite exporter YedA | |||
| 11530 | DUF977 family protein | |||
| 11535 | M | M.EcoC4072ORF23345P (100% identity) | M.Eco1706ORF11535P | |
| 11540 | 139 aa hypothetical protein | |||
| 15070 | 92 aa hypothetical protein | |||
| 15075 | M | M.EcoW26ORF35400P (100% identity) | M.Eco1706ORF15075P | |
| 15080 | TrmB family transcriptional regulator | |||
| 18895 | 379 aa hypothetical protein | |||
| 18900 | R | Sso8033ORF3755P (99% identity) | CCWGG | Eco1706ORF18905P |
| 18905 | M | M.EcoC4072ORF6775P (100% identity) | M.Eco1706ORF18905P | |
| 18910 | 257 aa hypothetical protein | |||
| 18960 | phage lysis protein EssD | |||
| 18965 | M | M.Eco4073ORF18365P (100% identity) | M.Eco1706ORF18965P | |
| 18970 | TrmB family transcriptional regulator | |||
| plasmid unnamed1 | ||||
| 24340 | 91 aa hypothetical protein | |||
| ??? | M | M.SenMS114ORFFP (56% identity) | M.Eco1706ORFAP | |
| 24350 | 61 aa hypothetical protein | |||
| plasmid unnamed10 | ||||
| 25865 | 103 aa hypothetical protein | |||
| 25870 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco1706ORF25870P |
| 25875 | 73 aa hypothetical protein | |||
| plasmid unnamed12 | ||||
| 26950 | 55 aa hypothetical protein | |||
| 26955 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.Eco1706ORF26955P |
| 26960 | thermonuclease family protein | |||
| 27360 | 48 aa hypothetical protein | |||
| 27365 | M | M.YpsF1ORFBP (100% identity) | M.Eco1706ORF27365P | |
| 27370 | 202 aa hypothetical protein | |||
| 27620 | 243 aa hypothetical protein | |||
| 27625 | M | M.YpsF1ORFDP (95% identity) | M.Eco1706ORF27625P | |
| 27630 | 284 aa hypothetical protein | |||
| plasmid unnamed14 | ||||
| 29575 | 103 aa hypothetical protein | |||
| 29580 | M | M.EcoXJ61ORF24590P (100% identity) | M.Eco1706ORF29580P | |
| 29585 | 73 aa hypothetical protein | |||
| plasmid unnamed15 | ||||
| 29785 | 73 aa hypothetical protein | |||
| 29790 | M | M.EcoXJ61ORF24590P (100% identity) | M.Eco1706ORF29790P | |
| 29795 | 103 aa hypothetical protein | |||
| plasmid unnamed18 | ||||
| 31015 | group II intron reverse transcriptase/maturase | |||
| ??? | M | M.Eco9640ORFCP (63% identity) | M.Eco1706ORFBP | |
| 31025 | 259 aa hypothetical protein | |||
| plasmid unnamed5 | ||||
| 24860 | TerB family tellurite resistance protein | |||
| 24875 | M | M.Eco9006ORF5043P (99% identity) | M.Eco1706ORF24875P | |
| 24880 | recombination-associated protein RdgC | |||
| plasmid unnamed6 | ||||
| 25440 | glutamine--tRNA ligase | |||
| ??? | M | M.SenYU39ORF5083P (100% identity) | M.Eco1706ORF25445P | |
| 25450 | 206 aa hypothetical protein | |||