Escherichia coli AVS0790 |
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Putative Escherichia coli AVS0790 RM systems
Ref: Biggel,M. unpublished
REBASE ref # 31800
| Sequence length: | GenBank #: | |
| Chromosome: | 5,141,728 bp | CP124436 |
| plasmid pAVS0790-A: | 82,979 bp | CP124437 |
REBASE acronym: EcoS0790
Org_num: 67317
All begin QJP66_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18015 | endoribonuclease SymE | |||
| 18020 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoS0790ORF18030P |
| 18025 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoS0790ORF18030P |
| 18030 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoS0790ORF18030P |
| 18035 | restriction endonuclease | |||
| 19825 | ash family protein | |||
| 19830 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoS0790ORF19835P |
| 19835 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoS0790ORF19835P |
| 19840 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoS0790ORF19835P |
| 19845 | type IV toxin-antitoxin system AbiEi family | |||
| plasmid pAVS0790-A | ||||
| 25695 | IS1-like element IS1A family transposase | |||
| 25700 | R | KpnKPH1ORF27575P (82% identity) | CAAYNNNNNCTGG | EcoS0790ORF25710P |
| 25705 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.EcoS0790ORF25710P |
| 25710 | M | M.SenceORFJP (99% identity) | CAAYNNNNNCTGG | M.EcoS0790ORF25710P |
| 25715 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3810 | drug/metabolite exporter YedA | |||
| 3815 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoS0790DcmP |
| 3820 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoS0790DcmP |
| 3825 | phosphohydrolase | |||
| 11580 | DNA-binding transcriptional regulator Fis | |||
| 11585 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS0790ORF11585P |
| 11590 | DUF2556 family protein | |||
| 12190 | ribulose-phosphate 3-epimerase | |||
| 12195 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS0790DamP |
| 12200 | cell division protein DamX | |||
| 15815 | PerC family transcriptional regulator | |||
| 15820 | M | M.Sso7924ORF2966P (100% identity) | GATC | M.EcoS0790ORF15820P |
| 15825 | LexA family transcriptional regulator | |||
| 17660 | helix-turn-helix domain-containing protein | |||
| 17665 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoS0790ORF17665P |
| 17670 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoS0790ORF17665P |
| 17675 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoS0790ORF17665P |
| 17680 | McrC family protein | |||
| 23065 | 71 aa hypothetical protein | |||
| 23070 | M | M.KpnYN1ORFGP (89% identity) | M.EcoS0790ORF23070P | |
| 23075 | helix-turn-helix transcriptional regulator | |||
| plasmid pAVS0790-A | ||||
| 25635 | 73 aa hypothetical protein | |||
| 25640 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoS0790ORF25640P |
| 25645 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17675 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 17680 | R | EcosS9McrCP (100% identity) | EcoS0790McrCP | |
| 17685 | R | EcosS3McrBP (100% identity) | EcoS0790McrBP | |
| 17690 | glycosyltransferase | |||
| 18030 | class I SAM-dependent DNA methyltransferase | |||
| 18035 | R | Ecou021MrrP (100% identity) | EcoS0790MrrP | |
| 18040 | BrnT family toxin | |||